Detailed information NTG0502630

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: KO461_RS09020
• Genome accession: NZ_CP076449
• Coordinates: 1839501..1840925 (+)
• Length: 474 a.a.
• NCBI ID: WP_005566294.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain CU1000N
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1834501..1845925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KO461_RS09015 (KO461_09010)	-	1838614..1839486 (+)	873	WP_005538868.1	DMT family transporter	-
KO461_RS09020 (KO461_09015)	sbcB	1839501..1840925 (+)	1425	WP_005566294.1	exodeoxyribonuclease I	Machinery gene
KO461_RS09025 (KO461_09020)	ftnA	1841825..1842310 (+)	486	WP_005538870.1	non-heme ferritin	-
KO461_RS09030 (KO461_09025)	ftnA	1842326..1842823 (+)	498	WP_005566292.1	non-heme ferritin	-
KO461_RS09035 (KO461_09030)	-	1842885..1843055 (-)	171	WP_005538872.1	hypothetical protein	-
KO461_RS09040 (KO461_09035)	-	1843164..1843937 (+)	774	WP_005538873.1	FNR family transcription factor	-
KO461_RS09045 (KO461_09040)	uspE	1844055..1844987 (+)	933	WP_005538874.1	universal stress protein UspE	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54777.31 Da
• Isoelectric Point: 5.2994

>NTDB_id=502630 KO461_RS09020 WP_005566294.1 1839501..1840925(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MAKNDFSFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEAVLVTGITPQECNEKGLSEPE
FAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPS
FCLEKLTEANGIAHDNAHDAMSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGNT
TLIASLAWHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKLIHINKCPIVAPAKTLLPQNAE
RLGIDQELCAKNRQRLQEARDIRQKVMDIFHQEREFDASDNVETKLYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDP
RIPELLFHYRARHFYRTLNRAEQIKWQKYCRKKLDAEALQFEQRLQELAEQYSNNEENLMLLQKVYEYGAQIIG

Nucleotide

• Length: 1425 bp

>NTDB_id=502630 KO461_RS09020 WP_005566294.1 1839501..1840925(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGGCAAAAAACGACTTTAGTTTTTTTATTTATGATTACGAAAGCTTTGGGGTTAATCCCGCAAAGGATCGCCCGGCACA
ATTCGGTGGCATTCGTACCGACGCAGATTTTAATATTATCGGTGAGCCGATTGTCCTTTATTGCAAGCAAACTAACGATT
ATTTGCCGGCACCGGAAGCGGTTTTAGTCACCGGAATTACACCACAGGAATGCAACGAAAAAGGGCTGTCGGAACCCGAA
TTTGCCGCCAAAATTTTACAGGAATTCAGCCGTCCGAATACTTGCGTGATGGGCTTTAATAACATTCGTTATGACGATGA
AATGACCCGTTATACGTTTTACCGTAATTTTATCGATCCTTATGAATACAGCTGGAAAAACGGCAATTCCCGTTGGGATT
TGCTGGATTTGGTGCGTGCTTGCTATGCGTTGCGTCCGGACGGTATTGAATGGCCTTTAGATGATGAAGGTATGCCGAGT
TTCTGCCTGGAAAAACTGACAGAGGCCAATGGAATAGCGCACGATAATGCGCATGATGCCATGTCAGATGTGTATGCCAC
TATTGAAATGGCAAAGCTCATCAAGCAGAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGGGGTAAAAAAGAGG
TTGAAAAGCTCATCGATACTGCAGAAATGACACCATTGGTACATGTATCGGGAATGTTGGGGAATTATCGCGGAAATACC
ACGTTAATTGCATCTTTAGCCTGGCATCCGACGAATAAAAATGCCGTTATTGTGTGTGATTTAACTGCCAATATTGATGA
TTTATTAACAAAATCGGTAGAGGAGTTGCGTGAAAATCTTTACACCAAAAAAGAGACCTTATTGGCTGCCGGTGCATTGC
CAGTGCCATTGAAGCTCATTCATATCAATAAATGTCCGATTGTTGCGCCGGCTAAAACTTTATTGCCGCAAAACGCCGAA
CGTCTAGGCATTGATCAGGAATTATGCGCAAAAAATCGACAACGTTTGCAGGAAGCAAGAGATATTCGCCAAAAAGTAAT
GGATATTTTTCATCAGGAACGTGAATTTGACGCTTCCGATAATGTTGAAACCAAACTGTATAACGGCTTTTTTAGTGACG
CCGATAAAAACAATATGGCGATTTTACGCAGTTTGGAACCCGAAAAATTGGCTAAACATAATCTTAGTTTTCAAGATCCA
CGAATTCCTGAATTACTGTTCCATTATCGTGCCAGACATTTCTATCGTACATTGAACCGTGCGGAACAAATTAAATGGCA
AAAATACTGCCGTAAAAAATTAGATGCCGAGGCTTTGCAATTTGAACAACGTCTTCAAGAATTAGCCGAACAATATTCCA
ACAATGAAGAAAATCTTATGTTATTGCAAAAGGTCTATGAATATGGAGCCCAAATAATCGGTTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (209-470)

• Exonuclease (RNase_T) (10-189)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	54.545	97.468	0.532