Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   KO461_RS06260 Genome accession   NZ_CP076449
Coordinates   1232255..1232998 (+) Length   247 a.a.
NCBI ID   WP_033001977.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1227255..1237998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS06220 (KO461_06215) tolR 1227641..1228063 (+) 423 WP_005542289.1 colicin uptake protein TolR -
  KO461_RS06225 (KO461_06220) tolA 1228080..1229246 (+) 1167 WP_005564381.1 cell envelope integrity protein TolA -
  KO461_RS06230 (KO461_06225) tolB 1229281..1230561 (+) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  KO461_RS06235 (KO461_06230) pal 1230576..1231043 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  KO461_RS06255 (KO461_06250) comN 1231747..1232268 (+) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KO461_RS06260 (KO461_06255) comO 1232255..1232998 (+) 744 WP_033001977.1 type II secretion system protein J Machinery gene
  KO461_RS06265 (KO461_06260) comP 1232995..1233690 (+) 696 WP_005537951.1 DUF2572 family protein Machinery gene
  KO461_RS06270 (KO461_06265) comQ 1233665..1233967 (+) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  KO461_RS06275 (KO461_06270) recC 1234013..1237402 (+) 3390 WP_205764697.1 exodeoxyribonuclease V subunit gamma -
  KO461_RS06280 (KO461_06275) rimI 1237404..1237847 (-) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28579.62 Da        Isoelectric Point: 8.2421

>NTDB_id=502622 KO461_RS06260 WP_033001977.1 1232255..1232998(+) (comO) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MMKNRAFFHVSPYHGQSLVALMISVALSSFLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNN
KLKQNNIALFEQENTPSAVTIAQVNGEKNNSCVLFFYDLDANGCIGGNYKGDACVVNGRNNTREIERELFGYRLHKNMLE
TRLTYKNAVKQNCSQDECRRYTQQSACHHGGWADLLDEKEYEISQLSFDWLSEQKGIEIRLSGRFKHHKQIEYETSMIVP
LLNGAKE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=502622 KO461_RS06260 WP_033001977.1 1232255..1232998(+) (comO) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGATGAAGAATAGAGCGTTTTTCCACGTGTCGCCTTATCACGGGCAAAGCCTTGTTGCGCTGATGATTTCCGTGGCGCT
TTCGAGCTTTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGAAATGTTACTGCGTTTGC
AGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGTGGTTTTCGTGCCGTAAATAAT
AAATTAAAACAAAATAATATCGCCTTATTCGAGCAAGAAAATACACCATCGGCAGTGACCATCGCGCAAGTGAATGGTGA
GAAAAATAACAGCTGCGTGTTGTTCTTTTATGACTTGGATGCCAATGGGTGTATCGGCGGAAATTATAAAGGCGATGCTT
GTGTTGTGAACGGGCGTAACAATACAAGAGAAATTGAGCGCGAATTATTCGGTTATCGACTTCATAAAAATATGCTGGAA
ACGCGTTTGACTTACAAAAATGCGGTGAAGCAAAACTGCTCCCAAGACGAGTGCCGCCGCTATACACAACAATCCGCGTG
TCATCACGGTGGTTGGGCAGATTTACTGGACGAGAAAGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTATCGGAAC
AAAAGGGGATTGAAATTCGCCTCAGTGGACGTTTTAAACACCATAAACAGATCGAATATGAAACTTCCATGATCGTGCCT
TTATTGAACGGAGCCAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

51.442

84.211

0.433