Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KO461_RS04420 Genome accession   NZ_CP076449
Coordinates   854926..856302 (-) Length   458 a.a.
NCBI ID   WP_005564591.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 849926..861302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS04400 (KO461_04415) - 850228..851832 (-) 1605 WP_005582533.1 toxin VasX -
  KO461_RS04405 (KO461_04420) - 851842..852738 (-) 897 WP_228414693.1 DUF4123 domain-containing protein -
  KO461_RS04410 (KO461_04425) ftsX 853293..854228 (-) 936 WP_005549070.1 permease-like cell division protein FtsX -
  KO461_RS04415 (KO461_04430) ftsE 854237..854887 (-) 651 WP_005537850.1 cell division ATP-binding protein FtsE -
  KO461_RS04420 (KO461_04435) pilA 854926..856302 (-) 1377 WP_005564591.1 signal recognition particle-docking protein FtsY Machinery gene
  KO461_RS04425 (KO461_04440) rsmD 856390..856974 (+) 585 WP_005549072.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KO461_RS04430 (KO461_04445) - 857273..858238 (+) 966 WP_005564587.1 mannose/fructose/sorbose PTS transporter subunit IIB -
  KO461_RS04435 (KO461_04450) - 858256..859053 (+) 798 WP_005541828.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  KO461_RS04440 (KO461_04455) manZ 859067..859903 (+) 837 WP_005564585.1 PTS mannose transporter subunit IID -
  KO461_RS04445 (KO461_04460) - 860013..861188 (+) 1176 WP_005564583.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50346.55 Da        Isoelectric Point: 4.2987

>NTDB_id=502610 KO461_RS04420 WP_005564591.1 854926..856302(-) (pilA) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MSDEKKKGGFWSWFGLGKNKQEESEEPKEQASQEETNQSVQEAQPEAQETAEKTTALFDESNTEDVQPMPEFAEIQPEIP
QPEEIVQPVPSADMAFESNQAIETLANSTALLGEETEAQAESAVEISDEFHEHKEESAVADMVETQEKPSEGGFFSRLLK
GLVKTKQNIGAGFRSFFLGKKIDDDLFEELEEQLLIADIGVPTTSKIINNLTQHATRQQLQNADSLYQQLKLEMGEILKP
VAQPLCIDGSKKPYVILIVGVNGVGKTTTIGKLARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDS
ASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKLFHEAVGL
TGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEFIEALFAHEEE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=502610 KO461_RS04420 WP_005564591.1 854926..856302(-) (pilA) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGTCGGATGAAAAGAAAAAAGGTGGTTTTTGGTCTTGGTTCGGATTAGGCAAAAATAAACAGGAAGAATCCGAAGAACC
GAAGGAACAAGCATCACAAGAAGAGACGAATCAAAGCGTTCAGGAAGCTCAACCTGAAGCGCAAGAAACGGCGGAAAAAA
CCACCGCACTTTTTGATGAATCAAATACCGAAGACGTACAGCCGATGCCGGAATTTGCTGAAATTCAACCTGAAATACCT
CAACCGGAAGAAATTGTACAGCCGGTTCCATCGGCGGACATGGCGTTTGAATCCAATCAAGCCATCGAAACGCTTGCAAA
TTCGACCGCACTTTTAGGCGAGGAAACGGAAGCACAAGCCGAAAGTGCGGTGGAAATTTCCGATGAATTTCATGAACACA
AAGAAGAAAGCGCCGTTGCCGACATGGTGGAAACGCAGGAAAAACCAAGCGAAGGCGGCTTTTTCAGTCGGTTATTAAAA
GGCTTGGTGAAAACCAAACAAAACATCGGCGCGGGTTTTCGTAGCTTTTTCTTAGGCAAAAAAATCGATGACGACTTGTT
CGAGGAATTGGAAGAACAGTTACTTATCGCCGACATCGGCGTGCCGACCACCAGCAAAATTATCAATAACCTCACCCAAC
ACGCCACCCGCCAACAGTTGCAAAATGCGGATTCGTTGTATCAACAGCTAAAACTGGAAATGGGCGAAATCCTGAAACCG
GTGGCGCAACCGTTGTGCATTGATGGAAGCAAAAAGCCTTATGTGATTTTGATAGTGGGCGTAAACGGCGTGGGCAAAAC
CACCACCATCGGCAAATTGGCGCGTAAATTCCAAATGGAAGGCAAATCCGTCATGTTGGCGGCGGGCGATACCTTCCGCG
CGGCGGCGGTGGAGCAGTTGCAGGTGTGGGGCGAACGTAACCACATTCCGGTGGTGGCGCAAAGCACCGGCTCCGATTCC
GCCTCGGTGATTTTTGATGCCATGCAATCGGCGGCGGCGCGTAATATCGACATTCTGATCGCCGACACCGCAGGGCGTCT
GCAAAATAAAAATAACCTGATGGACGAGCTGAAAAAAATCGTGCGCGTAATGAAAAAATACGACGAAAGCGCCCCGCACG
AAATCATGCTCACATTGGACGCCGGCACCGGTCAAAACGCCATCAGCCAAGCCAAATTGTTCCATGAAGCGGTGGGCTTA
ACCGGCATCAGCTTGACCAAACTGGACGGCACCGCCAAAGGCGGCGTGATTTTCGCCATCGCCGACCAATTCAACCTGCC
GATCCGCTACATCGGCGTCGGCGAAAAAATTGAAGATTTACGCGAATTCAACGCAGAAGAATTTATTGAGGCTTTATTTG
CTCATGAAGAGGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(254-453)

SRP54-type protein, helical bundle domain (SRP54_N)

(171-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.155

93.231

0.393