Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   KO461_RS03885 Genome accession   NZ_CP076449
Coordinates   748838..750835 (-) Length   665 a.a.
NCBI ID   WP_005544404.1    Uniprot ID   A0A142G0W1
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 743838..755835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS03860 (KO461_03870) - 743938..744555 (-) 618 WP_005544395.1 MarC family protein -
  KO461_RS03865 (KO461_03875) - 744636..746561 (+) 1926 WP_005564345.1 ABC transporter ATP-binding protein -
  KO461_RS03870 (KO461_03880) recA 746709..747767 (+) 1059 WP_005544399.1 recombinase RecA Machinery gene
  KO461_RS03875 (KO461_03885) recX 747849..748307 (+) 459 WP_005544401.1 recombination regulator RecX -
  KO461_RS03880 (KO461_03890) - 748380..748769 (+) 390 WP_005544402.1 RidA family protein -
  KO461_RS03885 (KO461_03895) recP/tkt 748838..750835 (-) 1998 WP_005544404.1 transketolase Machinery gene
  KO461_RS03890 (KO461_03900) tal 750968..751921 (-) 954 WP_061888225.1 transaldolase -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72766.44 Da        Isoelectric Point: 6.4684

>NTDB_id=502604 KO461_RS03885 WP_005544404.1 748838..750835(-) (recP/tkt) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MSNRQQLANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLHHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLSGY
DLSIEDLKQFRQLHSKTPGHPEYGYTPGVETTTGPLGQGISNAVGMAIAEKTLAGQFNRDGHNIVDHYTYAFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWQVIPAIDGHNPAQIAEAIKQAQAETAKPTL
IICKTIIGFGSPNKANSHDSHGAPLGDEEIALTRKALHWDYAPFEIPADIYAQWNAKAKGAEWEKAWDKKFAAYAKAYPE
LAAEFTRRIAKKLPADWAKDSQAFVEHLQANPASIASRKASQNAIEAYAKILPELLGGSADLASSNLTLWSGSKPIRATQ
NVDGNYINYGVREFGMAGIMNGIALHGGFIPYGATFLMFMEYAHNAIRMAALMKQRSLFVFTHDSIGLGEDGPTHQPVEQ
TAALRLIPNLNTWRPCDQVESAIAWKAAIERTDGPSALIFTRQNLAQMDRTSEQLANVARGAYVLKDCVGTPELIFIATG
SEVELAVKAAEQLTAEGKKVRVVSMPSTNVFDKQDEAYRESVLPSAVTKRVAIEAGISDFWYKYVGFNGRIVGMHSFGES
APADQLFKLFGFTVDNVVAKAKEIL

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=502604 KO461_RS03885 WP_005544404.1 748838..750835(-) (recP/tkt) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGTCAAATCGTCAACAACTCGCCAATGCAATTCGTTTTTTAAGTATGGATGCGGTACAAAAAGCGAAATCCGGTCACCC
GGGCGCACCTATGGGCATGGCGGATATCGCCGAAGTATTATGGCGTGATTTTTTACACCACAACCCGACCAACCCGCAAT
GGGCTAACCGCGACCGTTTTGTGCTGTCCAACGGACACGGTTCCATGCTGATTTACAGCTTATTACACCTCAGCGGTTAC
GATTTATCCATCGAAGATTTAAAACAATTCCGTCAACTGCACTCCAAAACACCGGGCCATCCTGAATACGGCTACACCCC
CGGTGTCGAAACCACCACCGGCCCGTTAGGTCAAGGCATTAGTAATGCGGTGGGGATGGCAATTGCGGAAAAAACCCTTG
CCGGTCAATTTAACCGTGACGGTCATAACATCGTTGATCACTATACTTACGCCTTTTTAGGCGACGGTTGTTTAATGGAG
GGGATTTCCCACGAAGCCTGTTCTTTAGCGGGAACCTTAGGTTTGGGTAAATTAATCGCATTCTATGATGACAACAATAT
CTCTATCGACGGACACGTTGACGGCTGGTTCACCGACGACACACAAAAACGCTTTGAAGCGTACGGCTGGCAAGTGATTC
CGGCAATCGACGGTCACAATCCGGCACAAATTGCCGAAGCCATCAAACAAGCGCAAGCGGAAACCGCCAAACCAACATTA
ATTATCTGTAAAACCATTATCGGTTTCGGTTCACCAAATAAAGCCAACTCGCATGACAGCCACGGCGCACCGTTGGGCGA
TGAAGAAATCGCTTTAACCCGCAAAGCGTTACATTGGGATTATGCCCCGTTTGAAATTCCGGCGGACATTTATGCACAAT
GGAATGCCAAAGCAAAAGGCGCGGAATGGGAAAAAGCCTGGGATAAAAAATTTGCCGCGTATGCCAAAGCCTATCCTGAA
TTAGCGGCTGAATTCACCCGTCGCATAGCGAAAAAACTTCCGGCCGACTGGGCAAAAGACTCTCAAGCATTTGTTGAGCA
TTTACAAGCCAATCCGGCAAGCATTGCAAGCCGCAAAGCCTCACAAAATGCCATTGAAGCCTACGCCAAAATTTTACCTG
AATTACTGGGCGGTTCTGCCGACTTGGCAAGTTCCAACTTAACCCTTTGGTCAGGTTCCAAACCAATCCGCGCCACCCAA
AACGTTGATGGTAACTACATCAACTACGGCGTGCGCGAATTCGGTATGGCGGGGATCATGAACGGTATCGCCTTGCACGG
CGGCTTCATTCCTTACGGCGCCACCTTCCTGATGTTCATGGAATACGCCCACAACGCCATTCGCATGGCGGCCTTAATGA
AGCAACGTTCATTATTTGTGTTCACCCACGATTCCATCGGCTTAGGCGAAGACGGCCCGACCCACCAACCGGTAGAACAA
ACTGCGGCATTGCGTTTAATTCCTAACTTGAACACATGGCGTCCTTGCGACCAAGTGGAATCCGCCATTGCGTGGAAAGC
GGCGATTGAAAGAACGGATGGTCCAAGCGCCTTAATTTTTACCCGCCAAAACTTGGCGCAGATGGACCGCACTTCCGAGC
AACTGGCAAATGTGGCGCGCGGGGCGTATGTCTTAAAAGATTGTGTCGGCACGCCGGAACTGATCTTTATCGCCACCGGT
TCTGAAGTGGAATTAGCAGTGAAAGCAGCAGAACAATTAACCGCTGAAGGCAAAAAAGTCCGCGTGGTTTCCATGCCGAG
CACCAACGTGTTCGATAAACAAGATGAAGCTTATCGCGAATCCGTGTTGCCTAGCGCCGTGACTAAACGCGTCGCCATTG
AAGCCGGTATTTCCGATTTCTGGTACAAATATGTCGGCTTCAACGGTCGTATCGTCGGCATGCATAGCTTCGGCGAATCC
GCACCGGCAGACCAATTATTCAAACTCTTTGGTTTCACGGTGGATAACGTCGTTGCCAAGGCAAAAGAAATACTCTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, C-terminal domain (Transketolase_C)

(551-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G0W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.245

99.549

0.49