Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KO461_RS03395 Genome accession   NZ_CP076449
Coordinates   652334..652969 (+) Length   211 a.a.
NCBI ID   WP_205764755.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 647334..657969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS03380 (KO461_03375) - 647376..647738 (+) 363 WP_205764753.1 hypothetical protein -
  KO461_RS03385 (KO461_03380) - 647742..649493 (+) 1752 WP_205764754.1 phage/plasmid primase, P4 family -
  KO461_RS03390 (KO461_03385) - 651465..651746 (+) 282 WP_228414683.1 type IV secretion protein Rhs -
  KO461_RS03395 (KO461_03390) sxy/tfoX 652334..652969 (+) 636 WP_205764755.1 TfoX/Sxy family DNA transformation protein Regulator
  KO461_RS03400 (KO461_03395) rpoH 653036..653884 (-) 849 WP_005548059.1 RNA polymerase sigma factor RpoH -
  KO461_RS03405 (KO461_03400) - 654069..654383 (-) 315 WP_005553397.1 DUF2322 family protein -
  KO461_RS03410 (KO461_03405) murB 654399..655424 (-) 1026 WP_005564651.1 UDP-N-acetylmuramate dehydrogenase -
  KO461_RS03415 (KO461_03410) narQ 655439..657142 (-) 1704 WP_205764756.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  KO461_RS03420 (KO461_03415) - 657418..657702 (+) 285 WP_005553391.1 chaperone NapD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23982.18 Da        Isoelectric Point: 10.4976

>NTDB_id=502598 KO461_RS03395 WP_205764755.1 652334..652969(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNMNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=502598 KO461_RS03395 WP_205764755.1 652334..652969(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATATGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAAGCCTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(118-196)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

41.327

92.891

0.384