Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KMZ16_RS18880 Genome accession   NZ_CP076445
Coordinates   3647534..3648667 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3642534..3653667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS18840 (KMZ16_18685) ywnA 3642696..3643097 (-) 402 WP_029318719.1 Rrf2 family transcriptional regulator -
  KMZ16_RS18845 (KMZ16_18690) ureC 3643232..3644941 (-) 1710 WP_069703623.1 urease subunit alpha -
  KMZ16_RS18850 (KMZ16_18695) ureB 3644938..3645312 (-) 375 WP_003227726.1 urease subunit beta -
  KMZ16_RS18855 (KMZ16_18700) ureA 3645309..3645626 (-) 318 WP_003227724.1 urease subunit gamma -
  KMZ16_RS18860 (KMZ16_18705) - 3645817..3645977 (-) 161 Protein_3661 hypothetical protein -
  KMZ16_RS21285 - 3646213..3646425 (-) 213 Protein_3662 urea ABC transporter substrate-binding protein -
  KMZ16_RS18870 (KMZ16_18715) csbD 3646638..3646826 (-) 189 WP_015251021.1 stress response protein CsbD -
  KMZ16_RS18875 (KMZ16_18720) - 3646899..3647378 (-) 480 WP_003244390.1 hypothetical protein -
  KMZ16_RS18880 (KMZ16_18725) rapC 3647534..3648667 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  KMZ16_RS18885 (KMZ16_18730) moaA 3648859..3649884 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  KMZ16_RS18890 (KMZ16_18735) fdhD 3649900..3650688 (-) 789 WP_015714864.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  KMZ16_RS18895 (KMZ16_18740) - 3650934..3651095 (-) 162 WP_003227706.1 hypothetical protein -
  KMZ16_RS18900 (KMZ16_18745) ywmD 3651190..3651864 (-) 675 WP_029726055.1 VWA domain-containing protein -
  KMZ16_RS18905 (KMZ16_18750) - 3651917..3652057 (-) 141 WP_003227702.1 hypothetical protein -
  KMZ16_RS18910 (KMZ16_18755) ywmC 3652188..3652871 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=502565 KMZ16_RS18880 WP_003227715.1 3647534..3648667(-) (rapC) [Bacillus subtilis subsp. subtilis strain ps4100]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=502565 KMZ16_RS18880 WP_003227715.1 3647534..3648667(-) (rapC) [Bacillus subtilis subsp. subtilis strain ps4100]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGTGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424