Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   KMZ16_RS09110 Genome accession   NZ_CP076445
Coordinates   1750378..1750809 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1745378..1755809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS09090 (KMZ16_09035) spoVS 1745939..1746199 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  KMZ16_RS09095 (KMZ16_09040) tdh 1746465..1747508 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  KMZ16_RS09100 (KMZ16_09045) kbl 1747521..1748699 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  KMZ16_RS09105 (KMZ16_09050) miaB 1748847..1750376 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  KMZ16_RS09110 (KMZ16_09055) ymcA 1750378..1750809 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  KMZ16_RS09115 (KMZ16_09060) cotE 1751071..1751616 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  KMZ16_RS09120 (KMZ16_09065) hexA 1751749..1754325 (+) 2577 WP_029726481.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=502500 KMZ16_RS09110 WP_003231834.1 1750378..1750809(+) (ymcA) [Bacillus subtilis subsp. subtilis strain ps4100]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=502500 KMZ16_RS09110 WP_003231834.1 1750378..1750809(+) (ymcA) [Bacillus subtilis subsp. subtilis strain ps4100]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1