Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   HWI52_RS01385 Genome accession   NZ_CP064498
Coordinates   328073..328738 (+) Length   221 a.a.
NCBI ID   WP_001830679.1    Uniprot ID   A0A2G7HYS8
Organism   Staphylococcus epidermidis strain UMCG379     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 323073..333738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI52_RS01370 (HWI52_01375) - 324430..325974 (+) 1545 WP_002456721.1 NAD(P)H-binding protein -
  HWI52_RS01375 (HWI52_01380) - 326097..327566 (-) 1470 WP_407568447.1 alkaline phosphatase -
  HWI52_RS01380 (HWI52_01385) - 327863..328042 (+) 180 WP_002456719.1 hypothetical protein -
  HWI52_RS01385 (HWI52_01390) braR 328073..328738 (+) 666 WP_001830679.1 response regulator transcription factor Regulator
  HWI52_RS01390 (HWI52_01395) braS 328744..329640 (+) 897 WP_002456718.1 HAMP domain-containing sensor histidine kinase Regulator
  HWI52_RS01395 (HWI52_01400) - 329751..330500 (+) 750 WP_002456717.1 ABC transporter ATP-binding protein -
  HWI52_RS01400 (HWI52_01405) - 330502..332514 (+) 2013 WP_002470142.1 ABC transporter permease -
  HWI52_RS01405 (HWI52_01410) - 332618..333208 (+) 591 WP_002456715.1 DUF4064 domain-containing protein -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25629.71 Da        Isoelectric Point: 5.0250

>NTDB_id=502406 HWI52_RS01385 WP_001830679.1 328073..328738(+) (braR) [Staphylococcus epidermidis strain UMCG379]
MKIFIVEDDLVIAESLANELSKWNYEVHVVDNFEKIMEDFRRVEPQLVLLDINLPTLNGFHWCQEMRKVSHVPIMFISSR
TDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILK
LLFQNENKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDDLIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=502406 HWI52_RS01385 WP_001830679.1 328073..328738(+) (braR) [Staphylococcus epidermidis strain UMCG379]
ATGAAGATTTTCATTGTAGAAGACGATTTAGTGATTGCTGAAAGTTTAGCTAATGAGCTATCTAAATGGAATTATGAGGT
GCATGTGGTTGATAATTTTGAAAAGATAATGGAAGATTTTCGCCGAGTAGAACCACAACTCGTATTATTAGATATCAATC
TACCAACACTTAATGGCTTCCATTGGTGCCAAGAAATGCGAAAAGTATCTCATGTGCCTATTATGTTTATTAGTTCAAGA
ACAGATAATATGGATCAAATTCTGGCTATCCAAATGGGTGGCGATGATTTTATCGAGAAACCATTTAACTTGTCTTTAAC
AGTAGCTAAAATTCAGGCACTATTGCGTCGCACTTATGATTTATCAATAGCTCGTGATGAAATAGCTGTTAAAGGTTGTA
AACTAATTGTTGATGAGGCCAAGCTTAGCAAGGATAATGAACATGTTCAACTTTCCTTAACAGAGCTACAGATATTAAAA
TTGTTATTTCAAAATGAAAATAAATATGTAAGTCGTACAGCTTTAATTGAGAAGTGTTGGGAGTCTGAGAATTTTATTGA
TGATAATACGCTCGCAGTAAATATGACACGATTACGAAAAAAATTACTTTCTATCGGTGTCGATGATTTAATTGAGACAA
AGAAAAATGTAGGATACAGGGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2G7HYS8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.186

100

0.792