Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KJY95_RS16670 Genome accession   NZ_CP076404
Coordinates   3412113..3412790 (+) Length   225 a.a.
NCBI ID   WP_000178154.1    Uniprot ID   P25960
Organism   Escherichia coli strain K-12 substr. AB1157     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3407113..3417790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJY95_RS16635 (KJY95_16605) gspG 3407593..3408030 (+) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -
  KJY95_RS16640 (KJY95_16610) gspH 3408038..3408547 (+) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  KJY95_RS16645 (KJY95_16615) gspI 3408544..3408921 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  KJY95_RS16650 (KJY95_16620) gspJ 3408914..3409501 (+) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  KJY95_RS16655 (KJY95_16625) gspK 3409494..3410477 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  KJY95_RS16660 (KJY95_16630) gspL 3410492..3411655 (+) 1164 WP_001115238.1 type II secretion system protein GspL -
  KJY95_RS16665 (KJY95_16635) gspM 3411652..3412113 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  KJY95_RS16670 (KJY95_16640) pilD 3412113..3412790 (+) 678 WP_000178154.1 prepilin peptidase GspO Machinery gene
  KJY95_RS16675 (KJY95_16645) bfr 3412819..3413295 (-) 477 WP_000675504.1 bacterioferritin -
  KJY95_RS16680 (KJY95_16650) bfd 3413367..3413561 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  KJY95_RS16685 (KJY95_16655) chiA 3413730..3416423 (-) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24956.82 Da        Isoelectric Point: 7.6353

>NTDB_id=502396 KJY95_RS16670 WP_000178154.1 3412113..3412790(+) (pilD) [Escherichia coli strain K-12 substr. AB1157]
MTMLLPLFILVGFIADYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=502396 KJY95_RS16670 WP_000178154.1 3412113..3412790(+) (pilD) [Escherichia coli strain K-12 substr. AB1157]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGATTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P25960

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378