Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KNZ81_RS24840 Genome accession   NZ_CP076385
Coordinates   5629507..5632512 (+) Length   1001 a.a.
NCBI ID   WP_164180255.1    Uniprot ID   -
Organism   Streptomyces sp. G11C(2021)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5624507..5637512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNZ81_RS24820 (KNZ81_24635) - 5625991..5626992 (+) 1002 WP_023422958.1 TerC family protein -
  KNZ81_RS24825 (KNZ81_24640) aroQ 5627100..5627573 (+) 474 WP_023419973.1 type II 3-dehydroquinate dehydratase -
  KNZ81_RS24830 (KNZ81_24645) - 5627833..5628489 (-) 657 WP_023419974.1 MBL fold metallo-hydrolase -
  KNZ81_RS24835 (KNZ81_24650) - 5628538..5629233 (-) 696 WP_164180257.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  KNZ81_RS24840 (KNZ81_24655) uvrA 5629507..5632512 (+) 3006 WP_164180255.1 excinuclease ABC subunit UvrA Machinery gene
  KNZ81_RS24845 (KNZ81_24660) - 5632680..5634434 (+) 1755 WP_023419977.1 alpha/beta-hydrolase family protein -
  KNZ81_RS24850 (KNZ81_24665) - 5634506..5634928 (+) 423 WP_033953268.1 Rieske (2Fe-2S) protein -
  KNZ81_RS24855 (KNZ81_24670) uvrC 5635005..5637089 (+) 2085 Protein_4877 excinuclease ABC subunit UvrC -

Sequence

Protein


Download         Length: 1001 a.a.        Molecular weight: 109665.86 Da        Isoelectric Point: 7.5816

>NTDB_id=502336 KNZ81_RS24840 WP_164180255.1 5629507..5632512(+) (uvrA) [Streptomyces sp. G11C(2021)]
MADRLIVRGAREHNLRNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPVCHRPISRQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGTTAQLSDPPKLKKQEKHTIEVVVDRLTVKESAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEDKSLDEGAIHPWSHGHTK
EYFGRLVGALADALNFRTDVPFAALPQRAKKALLQGHKTQIEVRYRNRYGRERVYTTAFEGAVPYVKRRHSEAESDSSRE
RFEGYMREVPCPTCEGTRLKPIVLAVTVMGKSIAEVSAMSITDCADFLDKLTLSGRDLKIAERVLKEVNERLRFLVDVGL
DYLSLNRPAGSLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WIVDIGPGAGEHGGKVVHSGSLDELLANKESITGQYLAGKRSIPVPEIRRPVDPARQLTVIGAKENNLRDIDVSFPLGVL
TAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVEGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDNVRKLFA
ETMEAKVRGYLPGRFSFNVKGGRCENCHGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEEA
LGFFEAVPTIARHLRTLNEVGLGYVRLGQPAPTLSGGEAQRVKLAAELQKRSTGRTVYVLDEPTTGLHFEDISKLITVLS
GLVDKGNSVIVIEHNLDVIKTADWVVDMGPEGGNGGGLVVAEGTPEEVAGVPASHTGKFLQDVLGADRISEASAAPRSGG
ARRTGATRKAVAAKKPAAKKTAAKKTVAKKTPAKKAPRTAK

Nucleotide


Download         Length: 3006 bp        

>NTDB_id=502336 KNZ81_RS24840 WP_164180255.1 5629507..5632512(+) (uvrA) [Streptomyces sp. G11C(2021)]
GTGGCCGACCGTCTCATCGTCCGTGGTGCCCGCGAGCACAATCTGAGGAATGTCTCGCTCGACCTGCCGCGTGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCCTCGCTCGCGTTCGACACGATCTTCGCCGAGGGCCAGCGGCGGT
ACGTCGAGTCCCTCTCCTCGTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCCGACGTCGACTTCATCGAGGGCCTC
TCGCCCGCGGTCTCCATCGACCAGAAGTCCACCTCGCGCAACCCGCGCTCCACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTCCGGCTGCTCTTCGCCCGGATCGGCAAGCCGCACTGCCCGGTCTGCCACCGCCCGATCTCCCGCCAGTCGCCGC
AGGCCATCGTGGACAAGGTGCTGGGCCTGCCCGAGGGCAGCCGCTTCCAGGTGCTCTCCCCGCTGGTCCGTGAGCGCAAG
GGTGAGTTCGTCGACCTCTTCGCCGACCTCCAGACCAAGGGGTACAGCCGCGCACGCGTCGACGGCACCACGGCTCAGCT
CTCCGACCCGCCGAAGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACGGTCAAGGAGAGCG
CCAAGCGCCGCCTCACCGACTCCGTGGAGACCGCCCTCGGCCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGGATGTACTCCGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACCGGCATCGGCACCCGCATGGAGGTCG
ACCCGGAGCTGATCGTCCCGGACGAGGACAAGTCCCTGGACGAGGGCGCCATCCACCCCTGGTCGCACGGGCACACCAAG
GAGTACTTCGGCCGGCTGGTCGGCGCCCTCGCCGACGCGCTGAACTTCCGCACCGACGTGCCCTTCGCCGCGCTCCCGCA
GCGCGCGAAGAAGGCCCTGCTCCAGGGCCACAAGACCCAGATCGAGGTCCGCTACCGCAACCGCTACGGCCGCGAGCGGG
TCTACACCACCGCCTTCGAGGGCGCCGTGCCCTACGTCAAGCGGCGCCACTCCGAGGCGGAGAGCGACTCCAGCCGGGAG
CGGTTCGAGGGGTACATGCGGGAGGTCCCCTGCCCGACCTGCGAGGGGACCCGGCTCAAGCCGATCGTGCTGGCGGTCAC
GGTGATGGGCAAGTCCATCGCCGAGGTCTCCGCCATGTCGATCACCGACTGCGCCGACTTCCTCGACAAGCTCACCCTCT
CCGGCCGCGACCTCAAGATCGCCGAGCGCGTCCTCAAGGAGGTCAACGAACGCCTCCGCTTCCTGGTCGACGTCGGCCTC
GACTACCTCTCCCTCAACCGCCCGGCGGGCTCCCTCTCCGGCGGTGAGGCCCAGCGCATCCGGCTGGCCACCCAGATCGG
CTCCGGCCTGGTCGGCGTGCTCTACGTCCTGGACGAGCCCTCCATCGGCCTCCACCAGCGCGACAACCACCGGCTGATCG
AGACCCTGGTCCGCCTGCGCGACATGGGCAACACGCTGATCGTGGTGGAGCACGACGAGGACACCATCAAGGTCGCCGAC
TGGATCGTGGACATCGGCCCGGGCGCCGGTGAGCACGGCGGAAAGGTCGTCCACTCCGGCTCGCTGGACGAACTGCTCGC
CAACAAGGAGTCGATCACCGGCCAGTACCTCGCCGGCAAGCGCTCCATCCCGGTGCCGGAGATCCGCCGCCCGGTCGACC
CGGCGCGGCAGCTGACGGTGATCGGTGCCAAGGAGAACAACCTCCGCGACATCGACGTCTCCTTCCCGCTCGGCGTCCTC
ACCGCCGTCACCGGAGTCTCGGGCTCCGGCAAGTCGACGCTGGTCAACGACATCCTCTACACCCACCTGGCCCGCGAGCT
GAACGGCGCCAAGAGCGTCCCCGGCCGCCACACCCGGGTCGAGGGCGACGACCTCGTCGACAAGGTCGTGCACGTCGACC
AGTCGCCGATCGGCCGCACCCCCCGCTCCAACCCGGCCACGTACACCGGCGTCTTCGACAACGTCCGCAAGCTCTTCGCC
GAGACGATGGAAGCCAAGGTCCGCGGGTACCTCCCCGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CCACGGCGACGGCACCATCAAGATCGAGATGAACTTCCTGCCCGACGTGTACGTCCCCTGCGAGGTCTGCCACGGGGCGC
GCTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTGCTGGACATGCCCATCGAGGAGGCG
CTCGGCTTCTTCGAGGCCGTCCCCACCATCGCCCGCCACCTGCGCACGCTCAACGAGGTCGGCCTCGGGTACGTCCGCCT
CGGACAGCCCGCGCCGACCCTCTCCGGCGGCGAGGCGCAGCGCGTCAAGCTCGCCGCCGAGCTCCAGAAGCGCTCCACCG
GACGCACGGTCTACGTCCTGGACGAGCCCACCACCGGCCTGCACTTCGAGGACATCAGCAAGCTGATCACCGTCCTCTCC
GGTCTGGTAGACAAGGGCAACTCGGTCATCGTCATCGAGCACAACCTCGACGTCATCAAGACCGCCGACTGGGTCGTCGA
CATGGGCCCCGAGGGCGGCAACGGCGGCGGCCTGGTCGTCGCCGAAGGCACCCCCGAGGAGGTGGCCGGCGTCCCCGCCA
GCCACACCGGCAAGTTCCTTCAGGACGTCCTCGGCGCCGACCGGATCAGCGAGGCCTCGGCCGCGCCCCGCTCCGGCGGT
GCTCGCAGGACGGGGGCCACCCGCAAGGCGGTCGCGGCCAAGAAGCCCGCCGCGAAGAAGACGGCGGCCAAGAAGACCGT
GGCCAAGAAGACCCCGGCGAAGAAGGCGCCGCGCACCGCCAAGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(628-864)

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.72

94.406

0.535
  uvrA Streptococcus pneumoniae TIGR4

56.72

94.406

0.535
  uvrA Streptococcus pneumoniae D39

56.72

94.406

0.535