Detailed information NTG0502244

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KM937_RS17230
• Genome accession: NZ_CP076344
• Coordinates: 3550165..3551157 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0096
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3545165..3556157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KM937_RS17210 (KM937_17210)	ygbM	3545796..3546572 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
KM937_RS17215 (KM937_17215)	ygbN	3546661..3548025 (+)	1365	WP_000104433.1	GntP family transporter	-
KM937_RS17220 (KM937_17220)	-	3548168..3549211 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
KM937_RS17225 (KM937_17225)	-	3549436..3549987 (+)	552	WP_001179442.1	flavodoxin family protein	-
KM937_RS17230 (KM937_17230)	rpoS	3550165..3551157 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KM937_RS17235 (KM937_17235)	nlpD	3551220..3552314 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KM937_RS17240 (KM937_17240)	pcm	3552499..3553125 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
KM937_RS17245 (KM937_17245)	surE	3553119..3553880 (-)	762	WP_115199290.1	5'/3'-nucleotidase SurE	-
KM937_RS17250 (KM937_17250)	truD	3553861..3554910 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
KM937_RS17255 (KM937_17255)	ispF	3554907..3555386 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KM937_RS17260 (KM937_17260)	ispD	3555386..3556096 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=502244 KM937_RS17230 WP_000081550.1 3550165..3551157(-) (rpoS) [Escherichia coli strain AVS0096]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=502244 KM937_RS17230 WP_000081550.1 3550165..3551157(-) (rpoS) [Escherichia coli strain AVS0096]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715