Detailed information NTG0502192

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: KM937_RS00265
• Genome accession: NZ_CP076344
• Coordinates: 47252..48277 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644911.1
• Uniprot ID: -
• Organism: Escherichia coli strain AVS0096
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 42252..53277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KM937_RS00235 (KM937_00235)	zapB	42336..42581 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
KM937_RS00240 (KM937_00240)	rraA	42666..43151 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
KM937_RS00245 (KM937_00245)	menA	43244..44170 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
KM937_RS00250 (KM937_00250)	hslU	44237..45568 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
KM937_RS00255 (KM937_00255)	hslV	45578..46108 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
KM937_RS00260 (KM937_00260)	ftsN	46201..47160 (-)	960	WP_000068847.1	cell division protein FtsN	-
KM937_RS00265 (KM937_00265)	cytR	47252..48277 (-)	1026	WP_000644911.1	DNA-binding transcriptional regulator CytR	Regulator
KM937_RS00270 (KM937_00270)	priA	48433..50631 (-)	2199	WP_001540348.1	primosomal protein N'	Machinery gene
KM937_RS00275 (KM937_00275)	rpmE	50834..51046 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
KM937_RS00280 (KM937_00280)	yiiX	51107..51715 (-)	609	WP_000702298.1	YiiX family permuted papain-like enzyme	-
KM937_RS00285 (KM937_00285)	metJ	51775..52092 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37805.71 Da
• Isoelectric Point: 6.1617

>NTDB_id=502192 KM937_RS00265 WP_000644911.1 47252..48277(-) (cytR) [Escherichia coli strain AVS0096]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHNRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=502192 KM937_RS00265 WP_000644911.1 47252..48277(-) (cytR) [Escherichia coli strain AVS0096]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACTCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCACAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGTACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAATCGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTCCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCTGGAAGCAAAGCAATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625