Detailed information NTG0502078

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KNN07_RS16985
• Genome accession: NZ_CP076305
• Coordinates: 3486072..3487064 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Survcare253
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3481072..3492064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KNN07_RS16965 (KNN07_16965)	otnK	3481847..3483109 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
KNN07_RS16970 (KNN07_16970)	ygbL	3483106..3483744 (+)	639	WP_001278994.1	aldolase	-
KNN07_RS16975 (KNN07_16975)	ygbM	3483749..3484525 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KNN07_RS16980 (KNN07_16980)	ygbN	3484614..3485978 (+)	1365	WP_000104456.1	GntP family transporter	-
KNN07_RS16985 (KNN07_16985)	rpoS	3486072..3487064 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KNN07_RS16990 (KNN07_16990)	nlpD	3487127..3488221 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KNN07_RS16995 (KNN07_16995)	pcm	3488406..3489032 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KNN07_RS17000 (KNN07_17000)	surE	3489026..3489787 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
KNN07_RS17005 (KNN07_17005)	truD	3489768..3490817 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KNN07_RS17010 (KNN07_17010)	ispF	3490814..3491293 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KNN07_RS17015 (KNN07_17015)	ispD	3491293..3492003 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=502078 KNN07_RS16985 WP_000081550.1 3486072..3487064(-) (rpoS) [Escherichia coli strain Survcare253]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=502078 KNN07_RS16985 WP_000081550.1 3486072..3487064(-) (rpoS) [Escherichia coli strain Survcare253]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715