Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KNN07_RS16710 Genome accession   NZ_CP076305
Coordinates   3433322..3433837 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain Survcare253     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3428322..3438837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN07_RS16685 (KNN07_16685) ygaZ 3428721..3429458 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  KNN07_RS16690 (KNN07_16690) ygaH 3429448..3429783 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  KNN07_RS16695 (KNN07_16695) emrR 3429874..3430404 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  KNN07_RS16700 (KNN07_16700) emrA 3430531..3431703 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  KNN07_RS16705 (KNN07_16705) emrB 3431720..3433258 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  KNN07_RS16710 (KNN07_16710) luxS 3433322..3433837 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  KNN07_RS16715 (KNN07_16715) gshA 3433987..3435543 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  KNN07_RS16720 (KNN07_16720) yqaA 3435616..3436044 (-) 429 WP_001287457.1 YqaA family protein -
  KNN07_RS16725 (KNN07_16725) yqaB 3436041..3436607 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  KNN07_RS16755 (KNN07_16755) csrA 3438200..3438385 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=502075 KNN07_RS16710 WP_001130207.1 3433322..3433837(-) (luxS) [Escherichia coli strain Survcare253]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=502075 KNN07_RS16710 WP_001130207.1 3433322..3433837(-) (luxS) [Escherichia coli strain Survcare253]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731