Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KNN07_RS13250 Genome accession   NZ_CP076305
Coordinates   2690394..2691821 (+) Length   475 a.a.
NCBI ID   WP_001374015.1    Uniprot ID   -
Organism   Escherichia coli strain Survcare253     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2685394..2696821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN07_RS13210 (KNN07_13210) yeeW 2685578..2685772 (+) 195 WP_000988600.1 DUF5983 family protein -
  KNN07_RS13215 (KNN07_13215) - 2685818..2685898 (+) 81 Protein_2609 hypothetical protein -
  KNN07_RS13220 (KNN07_13220) - 2686187..2686333 (-) 147 Protein_2610 transposase domain-containing protein -
  KNN07_RS13225 (KNN07_13225) - 2686384..2686569 (+) 186 Protein_2611 EutP/PduV family microcompartment system protein -
  KNN07_RS13230 (KNN07_13230) tmaR 2686670..2686999 (-) 330 WP_001374017.1 DUF496 family protein -
  KNN07_RS13235 (KNN07_13235) yeeA 2687171..2688229 (-) 1059 WP_001200890.1 FUSC family protein -
  KNN07_RS13240 (KNN07_13240) sbmC 2688427..2688900 (-) 474 WP_106489438.1 DNA gyrase inhibitor SbmC -
  KNN07_RS13245 (KNN07_13245) dacD 2689019..2690185 (-) 1167 WP_001374019.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KNN07_RS13250 (KNN07_13250) sbcB 2690394..2691821 (+) 1428 WP_001374015.1 exodeoxyribonuclease I Machinery gene
  KNN07_RS13255 (KNN07_13255) plaP 2691895..2693253 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KNN07_RS13260 (KNN07_13260) yoeI 2693243..2693305 (-) 63 WP_010723108.1 membrane protein YoeI -
  KNN07_RS13265 (KNN07_13265) yeeY 2693520..2694449 (-) 930 WP_001374016.1 LysR substrate-binding domain-containing protein -
  KNN07_RS13270 (KNN07_13270) yeeZ 2694495..2695319 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  KNN07_RS13275 (KNN07_13275) yoeB 2695402..2695656 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  KNN07_RS13280 (KNN07_13280) yefM 2695653..2695904 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  KNN07_RS13285 (KNN07_13285) hisL 2696187..2696237 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54496.83 Da        Isoelectric Point: 5.6070

>NTDB_id=502065 KNN07_RS13250 WP_001374015.1 2690394..2691821(+) (sbcB) [Escherichia coli strain Survcare253]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELNSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=502065 KNN07_RS13250 WP_001374015.1 2690394..2691821(+) (sbcB) [Escherichia coli strain Survcare253]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGAATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579