Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KNN06_RS00565 Genome accession   NZ_CP076301
Coordinates   113360..114787 (-) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain Survcare321     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108360..119787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN06_RS00535 (KNN06_00535) yeeZ 108415..109239 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  KNN06_RS00540 (KNN06_00540) yeeY 109285..110214 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  KNN06_RS00545 (KNN06_00545) yoeI 110429..110491 (+) 63 WP_010723108.1 membrane protein YoeI -
  KNN06_RS00550 (KNN06_00550) plaP 110481..111839 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KNN06_RS00555 (KNN06_00555) tsuA 112018..113076 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  KNN06_RS00560 (KNN06_00560) tsuB 113090..113317 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KNN06_RS00565 (KNN06_00565) sbcB 113360..114787 (-) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  KNN06_RS00570 (KNN06_00570) dacD 114996..116162 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KNN06_RS00575 (KNN06_00575) sbmC 116281..116754 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  KNN06_RS00580 (KNN06_00580) yeeA 116952..118010 (+) 1059 WP_001200890.1 FUSC family protein -
  KNN06_RS00585 (KNN06_00585) tmaR 118182..118511 (+) 330 WP_000450409.1 DUF496 family protein -
  KNN06_RS00590 (KNN06_00590) - 118612..118794 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KNN06_RS00595 (KNN06_00595) - 118848..118994 (+) 147 Protein_119 transposase domain-containing protein -
  KNN06_RS00600 (KNN06_00600) - 119283..119363 (-) 81 Protein_120 hypothetical protein -
  KNN06_RS00605 (KNN06_00605) yeeW 119409..119603 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=501945 KNN06_RS00565 WP_021523141.1 113360..114787(-) (sbcB) [Escherichia coli strain Survcare321]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=501945 KNN06_RS00565 WP_021523141.1 113360..114787(-) (sbcB) [Escherichia coli strain Survcare321]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581