Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IUH68_RS09310 Genome accession   NZ_CP064406
Coordinates   1884934..1886616 (-) Length   560 a.a.
NCBI ID   WP_212462933.1    Uniprot ID   -
Organism   Enterococcus faecium strain PR05720-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879934..1891616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUH68_RS09280 (IUH68_09280) ftsL 1881207..1881608 (-) 402 WP_002291866.1 cell division protein FtsL -
  IUH68_RS09285 (IUH68_09285) rsmH 1881613..1882572 (-) 960 WP_002291868.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  IUH68_RS09290 (IUH68_09290) mraZ 1882593..1883024 (-) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  IUH68_RS09295 (IUH68_09295) - 1883194..1883562 (-) 369 WP_002291871.1 DUF3397 domain-containing protein -
  IUH68_RS09300 (IUH68_09300) - 1883733..1884689 (+) 957 WP_080489686.1 magnesium transporter CorA family protein -
  IUH68_RS09305 (IUH68_09305) - 1884762..1884878 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  IUH68_RS09310 (IUH68_09310) recN 1884934..1886616 (-) 1683 WP_212462933.1 DNA repair protein RecN Machinery gene
  IUH68_RS09315 (IUH68_09315) - 1886634..1887083 (-) 450 WP_002291879.1 ArgR family transcriptional regulator -
  IUH68_RS09320 (IUH68_09320) - 1887190..1888008 (-) 819 WP_002291881.1 TlyA family RNA methyltransferase -
  IUH68_RS09325 (IUH68_09325) - 1888017..1888907 (-) 891 WP_002291883.1 polyprenyl synthetase family protein -
  IUH68_RS09330 (IUH68_09330) - 1888909..1889133 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  IUH68_RS09335 (IUH68_09335) xseA 1889138..1890475 (-) 1338 WP_212462934.1 exodeoxyribonuclease VII large subunit -
  IUH68_RS09340 (IUH68_09340) - 1890476..1891330 (-) 855 WP_002291887.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63396.76 Da        Isoelectric Point: 4.5791

>NTDB_id=501900 IUH68_RS09310 WP_212462933.1 1884934..1886616(-) (recN) [Enterococcus faecium strain PR05720-3]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCILEGSFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRKIGSYLVDIQGQNEHQELLQPESHLALLDRFGDAAFQQKKK
SYQQEYTSYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAVADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVAELQGIAHLDMEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDENRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLQLARRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=501900 IUH68_RS09310 WP_212462933.1 1884934..1886616(-) (recN) [Enterococcus faecium strain PR05720-3]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATCATTATCGATGCTTTAGGTTTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGCGCAGAAAAATGCATTCTTGAAGGATCGTTTGAACTTCCGAAACAAGAAGGATTCTCTGAATTGATG
GTTGAATTAGGTATCGAAACGGATGAAGACAATCTGATCGTTCGACGAGATATGTCGTTGACTGGAAAAAATGTTTGCCG
AGTGAATGGTCACATCATCACGCTAGCTAATCTAAGGAAAATCGGCAGTTATTTAGTGGATATCCAAGGGCAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGCAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATACCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGTTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGCTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGCGTTGGCTTGGCCGTTGCAGAATTGCAAGGGATCGCACATCTAGATATGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGTTACAAGATGCAATCGGAGACATGAGTCGTCAAATCGATTTGTTGG
AGTTAGATGAGAACCGTTTAGAAGAAGTGACTCAACGTCTAGAATTAATCCGACAGTTGAAACGCAAATATGGCGAATCC
ATTGAGTCGATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTAAAAAGTCTGTATATGGAAAACACTGAGTTTGAAGTACGTTTCTTA
AAAGAAGAAAACAGACAATTGAATCATGATGGGTTTGACCAAATCGAATTCTACATTACGACCAATCCAGGAGAGCCGCT
GAAGCCTTTAGTGAAAGTCGCTTCTGGTGGCGAATTATCTCGGATGTTACTGGCTTTGAAAACGATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATCTTTGATGAAGTGGATACAGGTGTAAGTGGAAGAGTTGCACAAGCCATCGCGGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTACCGCAAGTCGCCGCAGTCGCCGACTATCAATATTA
TATCGTGAAAGCAGTGATTGATGGTCGTACGCAAACTTCTGTTTCAGAATTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGCATGCTAGCTGGAAGTGAGATTACAAAACTGACACTCGAACATGCAAAAGAACTATTGCAACTCGCAAGAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.5