Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ITG71_RS24945 Genome accession   NZ_CP064403
Coordinates   5352428..5352985 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WTJH12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5347428..5357985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG71_RS24925 (ITG71_24910) pilR 5348704..5350041 (+) 1338 WP_023088571.1 two-component system response regulator PilR Regulator
  ITG71_RS24930 (ITG71_24915) thiO 5350087..5351181 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  ITG71_RS24935 (ITG71_24920) - 5351316..5351825 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  ITG71_RS24940 (ITG71_24925) - 5351931..5352437 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  ITG71_RS24945 (ITG71_24930) pilV 5352428..5352985 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  ITG71_RS24950 (ITG71_24935) pilW 5352982..5353806 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  ITG71_RS24955 (ITG71_24940) pilX 5353803..5354390 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  ITG71_RS24960 (ITG71_24945) pilY1 5354402..5357893 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=501870 ITG71_RS24945 WP_003119423.1 5352428..5352985(+) (pilV) [Pseudomonas aeruginosa strain WTJH12]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=501870 ITG71_RS24945 WP_003119423.1 5352428..5352985(+) (pilV) [Pseudomonas aeruginosa strain WTJH12]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995