Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ITG71_RS10285 Genome accession   NZ_CP064403
Coordinates   2188303..2188938 (+) Length   211 a.a.
NCBI ID   WP_222821353.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WTJH12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2183303..2193938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG71_RS10270 (ITG71_10270) - 2184009..2185253 (+) 1245 WP_023130769.1 lipoprotein-releasing ABC transporter permease subunit -
  ITG71_RS10275 (ITG71_10275) - 2185341..2185874 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ITG71_RS10280 (ITG71_10280) comA 2186005..2188230 (+) 2226 WP_003158743.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ITG71_RS10285 (ITG71_10285) exbB 2188303..2188938 (+) 636 WP_222821353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ITG71_RS10290 (ITG71_10290) - 2188935..2189375 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  ITG71_RS10295 (ITG71_10295) lpxK 2189375..2190373 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  ITG71_RS10300 (ITG71_10300) - 2190411..2190596 (+) 186 WP_003091157.1 Trm112 family protein -
  ITG71_RS10305 (ITG71_10305) kdsB 2190596..2191360 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ITG71_RS10310 (ITG71_10310) - 2191360..2191824 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  ITG71_RS10315 (ITG71_10315) murB 2191821..2192840 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22904.09 Da        Isoelectric Point: 6.7278

>NTDB_id=501856 ITG71_RS10285 WP_222821353.1 2188303..2188938(+) (exbB) [Pseudomonas aeruginosa strain WTJH12]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGIIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=501856 ITG71_RS10285 WP_222821353.1 2188303..2188938(+) (exbB) [Pseudomonas aeruginosa strain WTJH12]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTATCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806