Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A7A15_RS10935 Genome accession   NZ_CP076282
Coordinates   2218713..2220140 (+) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain 442/2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2213713..2225140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A15_RS10905 (A7A15_10860) cobU 2213985..2214530 (-) 546 WP_000973170.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  A7A15_RS10910 (A7A15_10865) - 2214712..2214888 (+) 177 Protein_2152 EutP/PduV family microcompartment system protein -
  A7A15_RS10915 (A7A15_10870) tmaR 2214989..2215318 (-) 330 WP_000450409.1 DUF496 family protein -
  A7A15_RS10920 (A7A15_10875) yeeA 2215490..2216548 (-) 1059 WP_001200891.1 FUSC family protein -
  A7A15_RS10925 (A7A15_10880) sbmC 2216746..2217219 (-) 474 WP_001105410.1 DNA gyrase inhibitor SbmC -
  A7A15_RS10930 (A7A15_10885) dacD 2217338..2218504 (-) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  A7A15_RS10935 (A7A15_10890) sbcB 2218713..2220140 (+) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  A7A15_RS10940 (A7A15_10895) tsuB 2220183..2220410 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  A7A15_RS10945 (A7A15_10900) tsuA 2220424..2221482 (-) 1059 WP_000492344.1 thiosulfate utilization transporter TsuA/YeeE -
  A7A15_RS10950 (A7A15_10905) plaP 2221661..2223019 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  A7A15_RS10955 (A7A15_10910) yoeI 2223009..2223071 (-) 63 WP_010723108.1 membrane protein YoeI -
  A7A15_RS10960 (A7A15_10915) yeeY 2223286..2224215 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  A7A15_RS10965 (A7A15_10920) yeeZ 2224261..2225085 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=501817 A7A15_RS10935 WP_000980607.1 2218713..2220140(+) (sbcB) [Escherichia coli strain 442/2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=501817 A7A15_RS10935 WP_000980607.1 2218713..2220140(+) (sbcB) [Escherichia coli strain 442/2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATCGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583