Detailed information NTG0501803

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ITG68_RS25305
• Genome accession: NZ_CP064399
• Coordinates: 5432464..5433825 (-)
• Length: 453 a.a.
• NCBI ID: WP_222831305.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain QZPH41
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5427464..5438825

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG68_RS25280 (ITG68_25270)	yjiA	5427651..5428655 (-)	1005	WP_003094852.1	GTPase	-
ITG68_RS25285 (ITG68_25275)	-	5428715..5428918 (-)	204	WP_003094856.1	YbdD/YjiX family protein	-
ITG68_RS25290 (ITG68_25280)	-	5428967..5431033 (-)	2067	WP_003094859.1	carbon starvation CstA family protein	-
ITG68_RS25295 (ITG68_25285)	-	5431371..5431877 (-)	507	WP_003094862.1	DUF3015 domain-containing protein	-
ITG68_RS25300 (ITG68_25290)	mapZ	5432080..5432457 (+)	378	WP_003094864.1	cyclic di-GMP-binding protein MapZ	-
ITG68_RS25305 (ITG68_25295)	radA	5432464..5433825 (-)	1362	WP_222831305.1	DNA repair protein RadA	Machinery gene
ITG68_RS25310 (ITG68_25300)	-	5433935..5434369 (+)	435	WP_222831306.1	CopD family protein	-
ITG68_RS25315 (ITG68_25305)	-	5434431..5434685 (-)	255	WP_003104887.1	YdcH family protein	-
ITG68_RS25320 (ITG68_25310)	-	5434760..5435311 (-)	552	WP_003121338.1	ankyrin repeat domain-containing protein	-
ITG68_RS25325 (ITG68_25315)	katB	5435365..5436906 (-)	1542	WP_003094881.1	catalase KatB	-
ITG68_RS25330 (ITG68_25320)	-	5436903..5437391 (-)	489	WP_170835787.1	hypothetical protein	-
ITG68_RS25335 (ITG68_25325)	mscL	5437434..5437847 (+)	414	WP_003104883.1	large-conductance mechanosensitive channel protein MscL	-
ITG68_RS25340 (ITG68_25330)	-	5437952..5438728 (-)	777	WP_034040494.1	ferredoxin--NADP reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48362.75 Da
• Isoelectric Point: 6.8357

>NTDB_id=501803 ITG68_RS25305 WP_222831305.1 5432464..5433825(-) (radA) [Pseudomonas aeruginosa strain QZPH41]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPIGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide

• Length: 1362 bp

>NTDB_id=501803 ITG68_RS25305 WP_222831305.1 5432464..5433825(-) (radA) [Pseudomonas aeruginosa strain QZPH41]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCGCCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGAGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTTCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGACCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGTGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTACTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCATCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (361-427)

• AAA domain (AAA_25) (75-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.458	100	0.486
radA	Streptococcus pneumoniae Rx1	46.288	100	0.468
radA	Streptococcus pneumoniae D39	46.288	100	0.468
radA	Streptococcus pneumoniae R6	46.288	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.288	100	0.468
radA	Streptococcus mitis SK321	46.389	100	0.468
radA	Streptococcus mitis NCTC 12261	46.171	100	0.466