Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ITG68_RS25005 Genome accession   NZ_CP064399
Coordinates   5363880..5364437 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain QZPH41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5358880..5369437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG68_RS24985 (ITG68_24975) pilR 5360156..5361493 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  ITG68_RS24990 (ITG68_24980) thiO 5361539..5362633 (-) 1095 WP_126558789.1 glycine oxidase ThiO -
  ITG68_RS24995 (ITG68_24985) - 5362768..5363277 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  ITG68_RS25000 (ITG68_24990) - 5363383..5363889 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  ITG68_RS25005 (ITG68_24995) pilV 5363880..5364437 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  ITG68_RS25010 (ITG68_25000) pilW 5364434..5365258 (+) 825 WP_031759378.1 type 4a pilus minor pilin PilW -
  ITG68_RS25015 (ITG68_25005) pilX 5365255..5365842 (+) 588 WP_222831302.1 type 4a pilus minor pilin PilX -
  ITG68_RS25020 (ITG68_25010) pilY1 5365854..5369345 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=501802 ITG68_RS25005 WP_003119423.1 5363880..5364437(+) (pilV) [Pseudomonas aeruginosa strain QZPH41]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=501802 ITG68_RS25005 WP_003119423.1 5363880..5364437(+) (pilV) [Pseudomonas aeruginosa strain QZPH41]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995