Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   A7A19_RS22500 Genome accession   NZ_CP076279
Coordinates   4526725..4527750 (-) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain SA53-3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4521725..4532750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A19_RS22470 (A7A19_22415) zapB 4521809..4522054 (+) 246 WP_001296623.1 septal ring assembly protein ZapB -
  A7A19_RS22475 (A7A19_22420) rraA 4522139..4522624 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  A7A19_RS22480 (A7A19_22425) menA 4522717..4523643 (-) 927 WP_001307494.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  A7A19_RS22485 (A7A19_22430) hslU 4523710..4525041 (-) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  A7A19_RS22490 (A7A19_22435) hslV 4525051..4525581 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  A7A19_RS22495 (A7A19_22440) ftsN 4525674..4526633 (-) 960 WP_000068834.1 cell division protein FtsN -
  A7A19_RS22500 (A7A19_22445) cytR 4526725..4527750 (-) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  A7A19_RS22505 (A7A19_22450) priA 4527906..4530104 (-) 2199 WP_001298972.1 primosomal protein N' Machinery gene
  A7A19_RS22510 (A7A19_22455) rpmE 4530307..4530519 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=501782 A7A19_RS22500 WP_000644904.1 4526725..4527750(-) (cytR) [Escherichia coli strain SA53-3]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=501782 A7A19_RS22500 WP_000644904.1 4526725..4527750(-) (cytR) [Escherichia coli strain SA53-3]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628