Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   A7A19_RS18805 Genome accession   NZ_CP076279
Coordinates   3761807..3762274 (+) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain SA53-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3756807..3767274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A19_RS18760 (A7A19_18715) rplP 3756917..3757327 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  A7A19_RS18765 (A7A19_18720) rpsC 3757340..3758041 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  A7A19_RS18770 (A7A19_18725) rplV 3758059..3758391 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  A7A19_RS18775 (A7A19_18730) rpsS 3758406..3758684 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  A7A19_RS18780 (A7A19_18735) rplB 3758701..3759522 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  A7A19_RS18785 (A7A19_18740) rplW 3759540..3759842 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  A7A19_RS18790 (A7A19_18745) rplD 3759839..3760444 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  A7A19_RS18795 (A7A19_18750) rplC 3760455..3761084 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  A7A19_RS18800 (A7A19_18755) rpsJ 3761117..3761428 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  A7A19_RS18805 (A7A19_18760) pilD 3761807..3762274 (+) 468 WP_000340171.1 A24 family peptidase Machinery gene
  A7A19_RS18810 (A7A19_18765) bfr 3762271..3762747 (-) 477 WP_000675515.1 bacterioferritin -
  A7A19_RS18815 (A7A19_18770) bfd 3762820..3763014 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  A7A19_RS18820 (A7A19_18775) tuf 3763197..3764381 (-) 1185 WP_000031783.1 elongation factor Tu -
  A7A19_RS18825 (A7A19_18780) fusA 3764452..3766566 (-) 2115 WP_000124700.1 elongation factor G -
  A7A19_RS18830 (A7A19_18785) rpsG 3766663..3767133 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=501761 A7A19_RS18805 WP_000340171.1 3761807..3762274(+) (pilD) [Escherichia coli strain SA53-3]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=501761 A7A19_RS18805 WP_000340171.1 3761807..3762274(+) (pilD) [Escherichia coli strain SA53-3]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361