Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECO55CA74_RS06075 Genome accession   NC_017656
Coordinates   1241161..1241790 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O55:H7 str. RM12579     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236161..1246790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO55CA74_RS06050 (ECO55CA74_05810) ycbZ 1236562..1238322 (-) 1761 WP_000156526.1 Lon protease family protein -
  ECO55CA74_RS06055 (ECO55CA74_05815) matP 1238508..1238960 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECO55CA74_RS06060 (ECO55CA74_05820) ompA 1239036..1240076 (-) 1041 WP_000750416.1 porin OmpA -
  ECO55CA74_RS06070 (ECO55CA74_05825) sulA 1240433..1240942 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECO55CA74_RS06075 (ECO55CA74_05830) sxy/tfoX 1241161..1241790 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECO55CA74_RS06080 (ECO55CA74_05835) yccS 1241753..1243915 (-) 2163 WP_000875023.1 YccS family putative transporter -
  ECO55CA74_RS06085 (ECO55CA74_05840) yccF 1243925..1244371 (-) 447 WP_001261230.1 YccF domain-containing protein -
  ECO55CA74_RS06090 (ECO55CA74_05845) helD 1244494..1246548 (+) 2055 WP_001419031.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=50174 ECO55CA74_RS06075 WP_000839153.1 1241161..1241790(+) (sxy/tfoX) [Escherichia coli O55:H7 str. RM12579]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=50174 ECO55CA74_RS06075 WP_000839153.1 1241161..1241790(+) (sxy/tfoX) [Escherichia coli O55:H7 str. RM12579]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment