Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A7A19_RS11785 Genome accession   NZ_CP076279
Coordinates   2328184..2329611 (+) Length   475 a.a.
NCBI ID   WP_257122888.1    Uniprot ID   -
Organism   Escherichia coli strain SA53-3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2323184..2334611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A19_RS11760 (A7A19_11705) - 2323682..2324197 (-) 516 Protein_2311 hypothetical protein -
  A7A19_RS11765 (A7A19_11710) - 2324295..2325275 (-) 981 WP_000399589.1 IS110-like element IS621 family transposase -
  A7A19_RS11770 (A7A19_11715) - 2325468..2326019 (-) 552 Protein_2313 FUSC family protein -
  A7A19_RS11775 (A7A19_11720) sbmC 2326217..2326690 (-) 474 WP_001105410.1 DNA gyrase inhibitor SbmC -
  A7A19_RS11780 (A7A19_11725) dacD 2326809..2327975 (-) 1167 WP_257122887.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  A7A19_RS11785 (A7A19_11730) sbcB 2328184..2329611 (+) 1428 WP_257122888.1 exodeoxyribonuclease I Machinery gene
  A7A19_RS11790 (A7A19_11735) tsuB 2329654..2329881 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  A7A19_RS11795 (A7A19_11740) tsuA 2329895..2330953 (-) 1059 WP_000492344.1 thiosulfate utilization transporter TsuA/YeeE -
  A7A19_RS11800 (A7A19_11745) plaP 2331132..2332490 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  A7A19_RS11805 (A7A19_11750) yoeI 2332480..2332542 (-) 63 WP_010723108.1 membrane protein YoeI -
  A7A19_RS11810 (A7A19_11755) yeeY 2332757..2333686 (-) 930 Protein_2321 LysR substrate-binding domain-containing protein -
  A7A19_RS11815 (A7A19_11760) yeeZ 2333732..2334556 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54440.70 Da        Isoelectric Point: 5.4700

>NTDB_id=501738 A7A19_RS11785 WP_257122888.1 2328184..2329611(+) (sbcB) [Escherichia coli strain SA53-3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIIVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=501738 A7A19_RS11785 WP_257122888.1 2328184..2329611(+) (sbcB) [Escherichia coli strain SA53-3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATCGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATAGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583