Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A7A21_RS05290 Genome accession   NZ_CP076276
Coordinates   1111756..1112385 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain SA31-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106756..1117385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A21_RS05270 (A7A21_05240) ycbZ 1107157..1108917 (-) 1761 WP_000156526.1 Lon protease family protein -
  A7A21_RS05275 (A7A21_05245) matP 1109103..1109555 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A7A21_RS05280 (A7A21_05250) ompA 1109631..1110671 (-) 1041 WP_000750416.1 porin OmpA -
  A7A21_RS05285 (A7A21_05255) sulA 1111028..1111537 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A7A21_RS05290 (A7A21_05260) sxy/tfoX 1111756..1112385 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A7A21_RS05295 (A7A21_05265) yccS 1112348..1114510 (-) 2163 WP_257114875.1 YccS family putative transporter -
  A7A21_RS05300 (A7A21_05270) yccF 1114520..1114966 (-) 447 WP_001261235.1 YccF domain-containing protein -
  A7A21_RS05305 (A7A21_05275) helD 1115089..1117143 (+) 2055 WP_257114876.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=501647 A7A21_RS05290 WP_000839153.1 1111756..1112385(+) (sxy/tfoX) [Escherichia coli strain SA31-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=501647 A7A21_RS05290 WP_000839153.1 1111756..1112385(+) (sxy/tfoX) [Escherichia coli strain SA31-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1