Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IUJ40_RS11675 Genome accession   NZ_CP064389
Coordinates   2302964..2304328 (-) Length   454 a.a.
NCBI ID   WP_023487096.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PartE-Saureus-RM8376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2297964..2309328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ40_RS11660 (IUJ40_11645) cysE 2298785..2299432 (-) 648 WP_001805237.1 serine O-acetyltransferase -
  IUJ40_RS11665 (IUJ40_11650) gltX 2299855..2301309 (-) 1455 WP_001283795.1 glutamate--tRNA ligase -
  IUJ40_RS11670 (IUJ40_11655) - 2301866..2302939 (-) 1074 WP_001028376.1 PIN/TRAM domain-containing protein -
  IUJ40_RS11675 (IUJ40_11660) radA 2302964..2304328 (-) 1365 WP_023487096.1 DNA repair protein RadA Machinery gene
  IUJ40_RS11680 (IUJ40_11665) - 2304814..2307270 (-) 2457 WP_000897132.1 ATP-dependent Clp protease ATP-binding subunit -
  IUJ40_RS11685 (IUJ40_11670) - 2307284..2308291 (-) 1008 WP_000149503.1 protein arginine kinase -
  IUJ40_RS11690 (IUJ40_11675) - 2308281..2308847 (-) 567 WP_000882069.1 UvrB/UvrC motif-containing protein -
  IUJ40_RS11695 (IUJ40_11680) - 2308866..2309327 (-) 462 WP_000551762.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49863.41 Da        Isoelectric Point: 7.0049

>NTDB_id=501598 IUJ40_RS11675 WP_023487096.1 2302964..2304328(-) (radA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLNSIKHETTPRVLTDSAEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVK
EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGTRPILIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKNNIGGWTYPEGIQVIGVTTVHEVLSFALHS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=501598 IUJ40_RS11675 WP_023487096.1 2302964..2304328(-) (radA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
TTGGCCAAGAAAAAAGTGATTTTTGAATGTATGGCTTGTGGTTATCAATCTCCTAAATGGATGGGGAAATGTCCTAATTG
TGGCGCTTGGAATCAAATGGAGGAAATTGTTGAAAAAGCAGCCAATCCTAAACATGGAGTTAAAACCAAGGAATTAGCAG
GTAAAGTACAAAAATTAAATAGTATTAAACATGAAACAACGCCGAGAGTGTTAACAGATTCAGCAGAATTCAACCGTGTA
TTAGGTGGAGGTATTGTGAGCGGATCGTTAGTACTTATTGGTGGGGATCCAGGTATTGGTAAGTCAACGTTACTTTTACA
AATTTGTGCATCGTTATCTCAAAAGAAAAAAGTACTATATATTACTGGAGAAGAATCGCTTAGTCAGACTAAATTACGTG
CAGAGCGATTAGATGAAGATTCAAGTGAATTGCAAGTATTAGCTGAAACAGATCTTGAAGTTATTTATCAAACAGTAAAA
GAAGAACAACCTGATTTATTAGTAGTGGATTCGATTCAAACAATATATCATCCTGAAATCAGCTCTGCGCCAGGTTCTGT
TTCACAAGTTCGTGAAAGTACACAAAGTTTAATGAATATTGCTAAACAAATGAACATTGCAACTTTTATAGTGGGTCATG
TAACGAAAGAAGGTCAAATTGCTGGCCCAAGATTGCTAGAACACATGGTTGATACTGTGCTTTATTTTGAAGGCGATGAA
CACCACGCATATCGAATTTTGCGAGCTGTTAAAAACCGTTTTGGTTCAACGAATGAAATGGGAATCTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTAAATAATCCATCTGAAATGTTTTTAGAAGAACGTTCAACAAATGTTCCAGGTTCAACAATTG
TTGCAACCATGGAGGGAACCAGACCAATTTTAATAGAAGTTCAAGCGCTGGTAACTCCAACGACTTTTAACAATCCGAGA
CGAATGGCAACAGGGATTGATCATAATCGATTAAGTTTGTTGATGGCTGTTTTGGAAAAGAAAGAAAATTATCTATTACA
ACAACAAGATGCTTATATCAAAGTAGCTGGCGGTGTAAAGTTAACGGAGCCAGCAGTTGATTTAAGTGTAATTGTAGCAA
CTGCATCTAGCTTTAAAGATAAAGCTGTCGACGGATTAGATTGCTATATTGGAGAAGTTGGTTTAACGGGTGAGGTACGT
CGTGTATCTCGGATAGAACAACGCGTGCAAGAGGCTGCAAAACTAGGTTTCAAACGTGTAATTATTCCTAAAAATAATAT
AGGCGGATGGACATATCCTGAAGGTATACAAGTAATAGGTGTAACTACTGTACATGAAGTATTGTCATTTGCTCTTCATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(77-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.674
  radA Streptococcus pneumoniae Rx1

62.5

98.678

0.617
  radA Streptococcus pneumoniae D39

62.5

98.678

0.617
  radA Streptococcus pneumoniae R6

62.5

98.678

0.617
  radA Streptococcus pneumoniae TIGR4

62.5

98.678

0.617
  radA Streptococcus mitis NCTC 12261

62.5

98.678

0.617
  radA Streptococcus mitis SK321

62.5

98.678

0.617