Detailed information NTG0501513

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A7A11_RS15650
• Genome accession: NZ_CP076272
• Coordinates: 3153680..3154624 (-)
• Length: 314 a.a.
• NCBI ID: WP_000081548.1
• Uniprot ID: -
• Organism: Escherichia coli strain E21845/O/A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3148680..3159624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7A11_RS15625	ygbN	3149287..3150651 (+)	1365	WP_000104439.1	GntP family transporter	-
A7A11_RS15630	-	3150690..3150926 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
A7A11_RS15635	-	3150937..3152364 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
A7A11_RS15640	-	3152364..3152957 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
A7A11_RS15645	-	3153104..3153511 (+)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
A7A11_RS15650	rpoS	3153680..3154624 (-)	945	WP_000081548.1	RNA polymerase sigma factor RpoS	Regulator
A7A11_RS15655	nlpD	3154687..3155781 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
A7A11_RS15660	pcm	3155966..3156592 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A7A11_RS15665	surE	3156586..3157347 (-)	762	WP_097311449.1	5'/3'-nucleotidase SurE	-
A7A11_RS15670	truD	3157328..3158377 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
A7A11_RS15675	ispF	3158374..3158853 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A7A11_RS15680	ispD	3158853..3159563 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36116.74 Da
• Isoelectric Point: 4.6098

>NTDB_id=501513 A7A11_RS15650 WP_000081548.1 3153680..3154624(-) (rpoS) [Escherichia coli strain E21845/O/A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR

Nucleotide

• Length: 945 bp

>NTDB_id=501513 A7A11_RS15650 WP_000081548.1 3153680..3154624(-) (rpoS) [Escherichia coli strain E21845/O/A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-314)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.816	98.408	0.717