Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IUJ52_RS05715 Genome accession   NZ_CP064379
Coordinates   1238680..1239198 (-) Length   172 a.a.
NCBI ID   WP_004723869.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1233680..1244198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS05690 (IUJ52_05680) rimM 1233766..1234320 (-) 555 WP_004723882.1 ribosome maturation factor RimM -
  IUJ52_RS05695 (IUJ52_05685) rpsP 1234348..1234596 (-) 249 WP_004723879.1 30S ribosomal protein S16 -
  IUJ52_RS05700 (IUJ52_05690) ffh 1234822..1236201 (-) 1380 WP_004723876.1 signal recognition particle protein -
  IUJ52_RS05705 (IUJ52_05695) - 1236414..1237208 (+) 795 WP_004723874.1 inner membrane protein YpjD -
  IUJ52_RS05710 (IUJ52_05700) - 1237299..1238573 (+) 1275 WP_004723872.1 HlyC/CorC family transporter -
  IUJ52_RS05715 (IUJ52_05705) luxS 1238680..1239198 (-) 519 WP_004723869.1 S-ribosylhomocysteine lyase Regulator
  IUJ52_RS05720 (IUJ52_05710) - 1239224..1239829 (-) 606 WP_004723868.1 hypothetical protein -
  IUJ52_RS05725 (IUJ52_05715) gshA 1239831..1241396 (-) 1566 WP_004723866.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18886.62 Da        Isoelectric Point: 4.6766

>NTDB_id=501429 IUJ52_RS05715 WP_004723869.1 1238680..1239198(-) (luxS) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVITAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=501429 IUJ52_RS05715 WP_004723869.1 1238680..1239198(-) (luxS) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTCACCATGCCAAACAAAGACATTCTGTCCGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCTGGCTTTATGCGTGCGCACCTCAATGGCGCGAACGTGGAAATTATCGACATCTCGCCG
ATGGGATGTCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGCGAAGAGCAAGTCGCCGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGCCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTACCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCG
TTGCCCGAATCGATGCTTAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.698

100

0.907