Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IUJ52_RS03755 Genome accession   NZ_CP064379
Coordinates   799121..800482 (-) Length   453 a.a.
NCBI ID   WP_086027297.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 794121..805482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS03720 (IUJ52_03715) moaE 794827..795282 (-) 456 WP_004726636.1 molybdopterin synthase catalytic subunit MoaE -
  IUJ52_RS03725 (IUJ52_03720) moaD 795284..795529 (-) 246 WP_004726637.1 molybdopterin synthase sulfur carrier subunit -
  IUJ52_RS03730 (IUJ52_03725) moaC 795526..796005 (-) 480 WP_004726638.1 cyclic pyranopterin monophosphate synthase MoaC -
  IUJ52_RS03735 (IUJ52_03730) moaB 796015..796527 (-) 513 WP_004726639.1 molybdenum cofactor biosynthesis protein B -
  IUJ52_RS03740 (IUJ52_03735) moaA 796598..797587 (-) 990 WP_004726640.1 GTP 3',8-cyclase MoaA -
  IUJ52_RS03745 (IUJ52_03740) - 797897..798787 (+) 891 WP_004726641.1 YvcK family protein -
  IUJ52_RS03750 (IUJ52_03745) luxU 798776..799114 (-) 339 WP_004726642.1 quorum-sensing phosphorelay protein LuxU -
  IUJ52_RS03755 (IUJ52_03750) luxO 799121..800482 (-) 1362 WP_086027297.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IUJ52_RS03760 (IUJ52_03755) uvrB 800769..802799 (-) 2031 WP_004726644.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50359.61 Da        Isoelectric Point: 5.7310

>NTDB_id=501427 IUJ52_RS03755 WP_086027297.1 799121..800482(-) (luxO) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKANKLKNETDNPGNQNYQGFIGSSQTMLAVYRTIDSAATSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPDVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREIALTMLPPPLNQLSDSRINVPKASPAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=501427 IUJ52_RS03755 WP_086027297.1 799121..800482(-) (luxO) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGGTCGAAGACACGGCGTCGGTTGCGGCGTTGTATCGTTCGTACCTGACACCGCTCGAGATCGATATCAACATTGTCGG
AACGGGACGTGAAGCGATCGAGAGTATCGCCCATCGCGAGCCGGATCTGATCCTCCTCGATCTGCGCCTGCCGGACATGA
CGGGTATGGACGTCTTGCATGCGGTGAAACAGCGTTCACCGGATGTGCCGGTGATTTTTATGACGGCGCATGGCTCCATT
GATACCGCCGTCGAAGCCATGCGCCACGGCGCGCAAGATTTCCTCATCAAACCGTGCGAAGCCGACCGTTTGCGTGTGAC
GGTCAACAACGCCATTCGCAAGGCAAACAAACTCAAAAACGAGACCGACAATCCGGGTAATCAGAATTACCAAGGGTTCA
TTGGCAGCAGCCAGACCATGTTGGCGGTGTATCGCACCATCGACTCTGCGGCCACCAGTAAAGCGAGTATTTTCATTACC
GGCGAAAGTGGTACCGGCAAAGAGGTGTGCGCCGAAGCCATCCATGCAGCCAGCAAGCGCGGCGACAAGCCGTTCATTGC
TATTAACTGTGCGGCCATTCCCAAAGATCTGATTGAAAGTGAGTTGTTCGGTCACGTCAAAGGTGCGTTTACTGGCGCGG
CGACGGATCGTCAGGGCGCGGCAGAACTGGCCGATGGCGGCACCTTGTTCTTGGACGAGCTGTGTGAAATGGATTTGGAT
CTGCAAACCAAGCTGCTGCGTTTTATTCAGACCGGGACCTTCCAGAAAGTCGGATCGTCTAAAATGAAGAGTGTGGACGT
GCGTTTTGTGTGTGCGACCAACCGTGACCCTTGGAAAGAAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTATTACCGTC
TGTACGTGATTCCGTTGCATCTGCCCCCTTTGCGTGAGCGCGGCGATGATGTGATTGAAATCGCGTATTCACTACTGGGG
TACATGTCGAAAGAAGAAGGCAAAGGCTTTGTGCGTTTGGCGCCAGATGTCGTAGAGCGCTTCAAACAGTACGAATGGCC
GGGGAACGTGCGCCAGCTGCAGAACGTGCTGCGCAACGTGGTGGTGCTTAATGAAGGGCGTGAAATTGCGCTGACAATGC
TGCCGCCACCGCTGAACCAATTGAGTGACTCACGCATCAATGTCCCGAAAGCCAGCCCAGCGCCGGTGTCGGTGCATGAA
ATTTTCCCGTTATGGATGACAGAAAAGCAGGCGATCGAAAAAGCAATCGAGGCCTGTGATGGCAATATTCCGCGTGCTGC
GGGCTATTTGGATGTCAGTCCATCCACCATCTACCGCAAGCTGCAAACCTGGAATGAAAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

90.828

98.675

0.896