Detailed information NTG0501419

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: IUJ52_RS01700
• Genome accession: NZ_CP064379
• Coordinates: 360188..361609 (+)
• Length: 473 a.a.
• NCBI ID: WP_004726195.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain PartQ-Vfurnissii-RM8376
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 355188..366609

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ52_RS01680 (IUJ52_01670)	cobT	355685..356713 (-)	1029	WP_004726191.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
IUJ52_RS01685 (IUJ52_01675)	-	356727..357338 (-)	612	WP_004726192.1	flavin reductase family protein	-
IUJ52_RS01690 (IUJ52_01680)	-	357754..358437 (+)	684	WP_004726193.1	NAD(P)H-binding protein	-
IUJ52_RS01695 (IUJ52_01685)	-	358639..360024 (+)	1386	WP_004726194.1	L-cystine transporter	-
IUJ52_RS01700 (IUJ52_01690)	sbcB	360188..361609 (+)	1422	WP_004726195.1	exodeoxyribonuclease I	Machinery gene
IUJ52_RS01705 (IUJ52_01695)	-	361650..362024 (+)	375	WP_004726196.1	CidA/LrgA family protein	-
IUJ52_RS01710 (IUJ52_01700)	-	362015..362695 (+)	681	WP_004726197.1	LrgB family protein	-
IUJ52_RS01715 (IUJ52_01705)	cdd	362904..363791 (+)	888	WP_004726199.1	cytidine deaminase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54344.71 Da
• Isoelectric Point: 4.8902

>NTDB_id=501419 IUJ52_RS01700 WP_004726195.1 360188..361609(+) (sbcB) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IDPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=501419 IUJ52_RS01700 WP_004726195.1 360188..361609(+) (sbcB) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCAATGGCGCAAGGGCTGCCTGAGCCCGAA
TTCATCGCCAAAATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGTTTTGATGATGA
AGTCACCCGCTACACCTGTTATCGCAACTTCCTTGACCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TACTGGATGTGATGCGAGCATGCCACGCATTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTCAAACTGGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCCGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTGCCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGACCCGCAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCGGATGAATTGCCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTGGCTCCAGCAAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAATGATGTGGATACGCAGCTCTATGACGGATTCTTCTCCCCTGCAG
ATAAAGCTGCGATGGAAATTATTCGTTCTACGAACCCTGAACTGCTCGGTGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGACCCCCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACGCTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACACATCTGCCCGATTACATGTTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (10-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.227	99.577	0.829