Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   IUJ54_RS10900 Genome accession   NZ_CP064378
Coordinates   2453813..2454505 (-) Length   230 a.a.
NCBI ID   WP_010945894.1    Uniprot ID   Q5ZZ78
Organism   Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2448813..2459505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ54_RS10895 (IUJ54_10865) - 2452742..2453812 (-) 1071 WP_010945895.1 hypothetical protein -
  IUJ54_RS10900 (IUJ54_10870) rocC 2453813..2454505 (-) 693 WP_010945894.1 ProQ/FINO family protein Regulator
  IUJ54_RS10905 (IUJ54_10875) - 2454862..2455047 (+) 186 WP_010945893.1 hypothetical protein -
  IUJ54_RS10910 (IUJ54_10880) dapB 2455227..2455958 (+) 732 WP_010945892.1 4-hydroxy-tetrahydrodipicolinate reductase -
  IUJ54_RS10915 (IUJ54_10885) - 2456062..2458530 (-) 2469 WP_010945891.1 hypothetical protein -
  IUJ54_RS10920 (IUJ54_10890) - 2458708..2458884 (+) 177 WP_014840774.1 dodecin domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25741.65 Da        Isoelectric Point: 10.7030

>NTDB_id=501408 IUJ54_RS10900 WP_010945894.1 2453813..2454505(-) (rocC) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQPSAVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=501408 IUJ54_RS10900 WP_010945894.1 2453813..2454505(-) (rocC) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGAGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATTGATTTGCACGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAGTCAGCCAAGTGCAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTCGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGAGAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZZ78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

97.391

100

0.974