Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IUJ48_RS08085 Genome accession   NZ_CP064377
Coordinates   1751889..1753253 (+) Length   454 a.a.
NCBI ID   WP_045953247.1    Uniprot ID   A0A0D6I3P3
Organism   Achromobacter xylosoxidans strain PartM-Axylosoxidans-RM8376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1746889..1758253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ48_RS08065 (IUJ48_08035) hpaE 1747894..1749360 (+) 1467 WP_024069546.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  IUJ48_RS08070 (IUJ48_08040) hpaD 1749400..1750251 (+) 852 WP_006384289.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  IUJ48_RS08075 (IUJ48_08045) hpaR 1750253..1750699 (-) 447 WP_006384288.1 homoprotocatechuate degradation operon regulator HpaR -
  IUJ48_RS08080 (IUJ48_08050) - 1750813..1751457 (-) 645 WP_020928470.1 hypothetical protein -
  IUJ48_RS08085 (IUJ48_08055) radA 1751889..1753253 (+) 1365 WP_045953247.1 DNA repair protein RadA Machinery gene
  IUJ48_RS08090 (IUJ48_08060) - 1753266..1754039 (+) 774 WP_020928467.1 sulfite exporter TauE/SafE family protein -
  IUJ48_RS08095 (IUJ48_08065) - 1754240..1754479 (+) 240 WP_006384018.1 hypothetical protein -
  IUJ48_RS08100 (IUJ48_08070) - 1754682..1755638 (-) 957 WP_024069544.1 2-hydroxyacid dehydrogenase -
  IUJ48_RS08105 (IUJ48_08075) - 1755749..1756720 (-) 972 WP_006384016.1 tripartite tricarboxylate transporter substrate binding protein -
  IUJ48_RS08110 (IUJ48_08080) - 1756794..1757795 (-) 1002 WP_024069543.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48249.33 Da        Isoelectric Point: 6.9553

>NTDB_id=501366 IUJ48_RS08085 WP_045953247.1 1751889..1753253(+) (radA) [Achromobacter xylosoxidans strain PartM-Axylosoxidans-RM8376]
MAKTRTVYVCAECGGTTPKWQGKCPHCNAWNTLEETVESSVPAAAASHRYAPLASSSPVRSLSEIEARETPRTPTGLEEF
DRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSESTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQA
AVSEQKPSVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAP
NPRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAG
EIRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=501366 IUJ48_RS08085 WP_045953247.1 1751889..1753253(+) (radA) [Achromobacter xylosoxidans strain PartM-Axylosoxidans-RM8376]
ATGGCCAAGACCCGAACCGTATACGTGTGCGCCGAATGCGGCGGCACCACCCCGAAATGGCAAGGCAAGTGTCCGCACTG
CAATGCCTGGAACACTCTGGAAGAAACCGTCGAATCGTCCGTGCCCGCGGCGGCCGCCTCGCACCGCTACGCGCCGCTGG
CCTCCAGCAGCCCCGTGCGCAGCCTGTCCGAGATCGAGGCGCGCGAAACCCCGCGTACCCCCACCGGGCTGGAGGAATTC
GACCGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCCT
GCTGCTGCAGGCGCTGGCGTCGCTCTCGGAAAGCACCAACGTGCTTTATGTCACGGGCGAGGAATCGGCCGAGCAAGTGG
CGTTGCGCGCGCGCCGGCTGGGTTTGCAGACCGGCAACGTCAACCTGCTGGCGGAAATCCGCCTGGAGGCGATCCAGGCG
GCGGTGTCCGAGCAGAAGCCCAGCGTGGCCGTGATCGACTCGATCCAGACCCTCTACAGCGGCGAACTGACCGCCGCGCC
CGGCTCGGTGTCGCAGGTGCGCGAGTGCGCCGCGCAATTGACGCGCCTGGCCAAGCAGACCGGCATCGCCATCGTCATGA
TCGGCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAACACATCGTTGATACGGTGCTGTACTTCGAG
GGCGACACGCACTCGTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGC
CATGACCGACCGCGGCCTGCGCGGCGTGGCCAACCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGCAGGTGGCCGGCT
CCTGCGTAATGGCCACGCAGGAGGGCACCCGTCCGCTGCTGGTCGAGATCCAGGCGCTGGTGGACAGTTCCCACGCGCCC
AATCCGCGCCGCCTGACGGTCGGCCTGGAGGGCAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCATGCCGGCGT
CTCGACCTTCGACCAGGACGTGTTCGTCAACGCCGTGGGCGGGGTGCGCATCACCGAGCCCGCGGCCGACCTGCCGGTGC
TGCTGGCCATCATGTCGTCGCTGCGCGACCGGCCCCTGCCGCGCGGGCTGATCGCCTTCGGCGAAGTCGGCCTGGCGGGC
GAGATCCGGCCCGCGCCGCGCGGCCAGGAACGCCTGCGCGAAGCCGCCAAGCTGGGCTTCTCGATCGCGCTCATCCCCAA
GGCCAATGCGCCGCGCCAGCCCATCGAGGGGCTGGAGATCTGGGCGGTGGACCGGCTCGACGCCGCGCTCGACAAGCTGC
GCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6I3P3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.877

100

0.511
  radA Streptococcus mitis NCTC 12261

46.476

100

0.465
  radA Streptococcus pneumoniae D39

48.712

94.053

0.458
  radA Streptococcus pneumoniae TIGR4

48.712

94.053

0.458
  radA Streptococcus mitis SK321

48.712

94.053

0.458
  radA Streptococcus pneumoniae R6

48.712

94.053

0.458
  radA Streptococcus pneumoniae Rx1

48.712

94.053

0.458