Detailed information NTG0501340

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: IUJ44_RS14525
• Genome accession: NZ_CP064375
• Coordinates: 3051253..3051954 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3046253..3056954

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ44_RS14490 (IUJ44_14460)	kdsB	3046776..3047537 (+)	762	WP_000680698.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
IUJ44_RS14495 (IUJ44_14465)	-	3047549..3048529 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
IUJ44_RS14500 (IUJ44_14470)	-	3048541..3048882 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
IUJ44_RS14505 (IUJ44_14475)	-	3048900..3049673 (+)	774	WP_000497298.1	TatD family hydrolase	-
IUJ44_RS14510 (IUJ44_14480)	-	3049711..3050319 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
IUJ44_RS14515 (IUJ44_14485)	-	3050329..3050883 (+)	555	WP_000841370.1	type II secretion system protein	-
IUJ44_RS14520 (IUJ44_14490)	xcpV	3050873..3051253 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
IUJ44_RS14525 (IUJ44_14495)	xcpW	3051253..3051954 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
IUJ44_RS14530 (IUJ44_14500)	gspK	3051954..3052913 (+)	960	WP_000301461.1	type II secretion system minor pseudopilin GspK	-
IUJ44_RS14535 (IUJ44_14505)	-	3053143..3053739 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
IUJ44_RS14540 (IUJ44_14510)	ung	3053790..3054503 (+)	714	WP_001177525.1	uracil-DNA glycosylase	-
IUJ44_RS14545 (IUJ44_14515)	-	3054500..3055624 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
IUJ44_RS14550 (IUJ44_14520)	tadA	3055631..3056134 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
IUJ44_RS14555 (IUJ44_14525)	-	3056204..3056647 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=501340 IUJ44_RS14525 WP_000594572.1 3051253..3051954(+) (xcpW) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=501340 IUJ44_RS14525 WP_000594572.1 3051253..3051954(+) (xcpW) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
TGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAACTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991