Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IUJ44_RS03720 Genome accession   NZ_CP064375
Coordinates   815462..815989 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 810462..820989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS03700 (IUJ44_03695) - 810651..811526 (-) 876 WP_000218797.1 hypothetical protein -
  IUJ44_RS03705 (IUJ44_03700) aroB 811542..812624 (-) 1083 WP_001194003.1 3-dehydroquinate synthase -
  IUJ44_RS03710 (IUJ44_03705) aroK 812653..813222 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IUJ44_RS03715 (IUJ44_03710) pilQ 813234..815399 (-) 2166 WP_001017037.1 type IV pilus secretin PilQ family protein Machinery gene
  IUJ44_RS03720 (IUJ44_03715) pilP 815462..815989 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  IUJ44_RS03725 (IUJ44_03720) pilO 816000..816740 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IUJ44_RS03730 (IUJ44_03725) - 816737..817378 (-) 642 Protein_717 PilN domain-containing protein -
  IUJ44_RS03735 (IUJ44_03730) pilM 817378..818436 (-) 1059 WP_005143496.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=501312 IUJ44_RS03720 WP_000695065.1 815462..815989(-) (pilP) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=501312 IUJ44_RS03720 WP_000695065.1 815462..815989(-) (pilP) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTGGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714