Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A7A17_RS11060 Genome accession   NZ_CP076264
Coordinates   2230732..2232159 (+) Length   475 a.a.
NCBI ID   WP_000980594.1    Uniprot ID   -
Organism   Escherichia coli strain NADC1036     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2225732..2237159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A17_RS11020 (A7A17_10985) yeeW 2225916..2226110 (+) 195 WP_000988599.1 DUF5983 family protein -
  A7A17_RS11025 (A7A17_10990) - 2226144..2226236 (+) 93 Protein_2171 DUF957 domain-containing protein -
  A7A17_RS11030 (A7A17_10995) - 2226525..2226662 (-) 138 Protein_2172 transposase domain-containing protein -
  A7A17_RS11035 (A7A17_11000) - 2226725..2226907 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  A7A17_RS11040 (A7A17_11005) tmaR 2227008..2227337 (-) 330 WP_000450409.1 DUF496 family protein -
  A7A17_RS11045 (A7A17_11010) yeeA 2227509..2228567 (-) 1059 WP_001200890.1 FUSC family protein -
  A7A17_RS11050 (A7A17_11015) sbmC 2228765..2229238 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  A7A17_RS11055 (A7A17_11020) dacD 2229357..2230523 (-) 1167 WP_000830170.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  A7A17_RS11060 (A7A17_11025) sbcB 2230732..2232159 (+) 1428 WP_000980594.1 exodeoxyribonuclease I Machinery gene
  A7A17_RS11065 (A7A17_11030) tsuB 2232202..2232429 (-) 228 WP_000985270.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  A7A17_RS11070 (A7A17_11035) tsuA 2232443..2233501 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  A7A17_RS11075 (A7A17_11040) plaP 2233680..2235038 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  A7A17_RS11080 (A7A17_11045) yoeI 2235028..2235090 (-) 63 WP_010723108.1 membrane protein YoeI -
  A7A17_RS11085 (A7A17_11050) yeeY 2235305..2236234 (-) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  A7A17_RS11090 (A7A17_11055) yeeZ 2236280..2237104 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=501262 A7A17_RS11060 WP_000980594.1 2230732..2232159(+) (sbcB) [Escherichia coli strain NADC1036]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=501262 A7A17_RS11060 WP_000980594.1 2230732..2232159(+) (sbcB) [Escherichia coli strain NADC1036]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACATTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583