Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   IUJ45_RS00790 Genome accession   NZ_CP064367
Coordinates   172727..174472 (+) Length   581 a.a.
NCBI ID   WP_082308603.1    Uniprot ID   -
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 167727..179472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS00765 (IUJ45_00790) - 167964..169502 (+) 1539 WP_002241585.1 SurA N-terminal domain-containing protein -
  IUJ45_RS00770 (IUJ45_00795) recR 169569..170186 (+) 618 WP_002217147.1 recombination mediator RecR -
  IUJ45_RS00775 (IUJ45_00800) - 170242..170520 (-) 279 WP_002213502.1 hypothetical protein -
  IUJ45_RS00780 (IUJ45_00805) - 170724..171971 (+) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  IUJ45_RS00785 (IUJ45_00810) lolD 171964..172659 (+) 696 WP_002217149.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  IUJ45_RS00790 (IUJ45_00815) recD 172727..174472 (+) 1746 WP_082308603.1 exodeoxyribonuclease V subunit alpha Machinery gene
  IUJ45_RS00795 (IUJ45_00820) - 174500..175603 (-) 1104 WP_002240523.1 class I SAM-dependent methyltransferase -
  IUJ45_RS00800 (IUJ45_00825) - 175578..175754 (-) 177 WP_226893060.1 nitric oxide synthase -
  IUJ45_RS00805 (IUJ45_00830) lon 175854..178304 (+) 2451 WP_197901990.1 endopeptidase La -
  IUJ45_RS00810 (IUJ45_00835) - 178486..178755 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  IUJ45_RS00815 (IUJ45_00840) - 178814..179248 (-) 435 WP_002222429.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62974.54 Da        Isoelectric Point: 5.3784

>NTDB_id=501153 IUJ45_RS00790 WP_082308603.1 172727..174472(+) (recD) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MERQTDEFAQAAARAAIWFLARYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVCRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTVLMLQLLKAVKTGARVILLGDENQLPSVGIGDVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPLLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=501153 IUJ45_RS00790 WP_082308603.1 172727..174472(+) (recD) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCTGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGTATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGACGTGCTGTCCGTCCTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGTGCAAATCCGCCCTTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.492

100

0.945