Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   IUJ41_RS02640 Genome accession   NZ_CP064365
Coordinates   505280..505849 (-) Length   189 a.a.
NCBI ID   WP_001836184.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PartF-Saureus-RM8376     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 500280..510849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ41_RS02600 (IUJ41_02585) - 500754..501362 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  IUJ41_RS02605 (IUJ41_02590) rplL 501537..501905 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  IUJ41_RS02610 (IUJ41_02595) rplJ 501948..502448 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  IUJ41_RS02615 (IUJ41_02600) rplA 502720..503412 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  IUJ41_RS02620 (IUJ41_02605) rplK 503620..504042 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  IUJ41_RS02625 (IUJ41_02610) nusG 504223..504771 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  IUJ41_RS02630 (IUJ41_02615) secE 504784..504966 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  IUJ41_RS02635 (IUJ41_02620) rpmG 505022..505165 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  IUJ41_RS02640 (IUJ41_02625) sigH 505280..505849 (-) 570 WP_001836184.1 sigma-70 family RNA polymerase sigma factor Regulator
  IUJ41_RS02645 (IUJ41_02630) - 505930..506454 (-) 525 WP_000664738.1 NYN domain-containing protein -
  IUJ41_RS02650 (IUJ41_02635) rlmB 506454..507200 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IUJ41_RS02655 (IUJ41_02640) - 507208..507612 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  IUJ41_RS02660 (IUJ41_02645) cysS 507605..509005 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  IUJ41_RS02665 (IUJ41_02650) cysE 508989..509636 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23056.96 Da        Isoelectric Point: 9.4170

>NTDB_id=501116 IUJ41_RS02640 WP_001836184.1 505280..505849(-) (sigH) [Staphylococcus aureus strain PartF-Saureus-RM8376]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=501116 IUJ41_RS02640 WP_001836184.1 505280..505849(-) (sigH) [Staphylococcus aureus strain PartF-Saureus-RM8376]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979