Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A7A20_RS14375 Genome accession   NZ_CP076259
Coordinates   2962280..2962795 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain WY517-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957280..2967795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A20_RS14350 (A7A20_14255) ygaZ 2957679..2958416 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  A7A20_RS14355 (A7A20_14260) ygaH 2958406..2958741 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  A7A20_RS14360 (A7A20_14265) emrR 2958832..2959362 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  A7A20_RS14365 (A7A20_14270) emrA 2959489..2960661 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  A7A20_RS14370 (A7A20_14275) emrB 2960678..2962216 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  A7A20_RS14375 (A7A20_14280) luxS 2962280..2962795 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  A7A20_RS14380 (A7A20_14285) gshA 2962945..2964501 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  A7A20_RS14385 (A7A20_14290) yqaA 2964574..2965002 (-) 429 WP_001287457.1 YqaA family protein -
  A7A20_RS14390 (A7A20_14295) yqaB 2964999..2965565 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  A7A20_RS14420 (A7A20_14325) csrA 2967158..2967343 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=501113 A7A20_RS14375 WP_001130211.1 2962280..2962795(-) (luxS) [Escherichia coli strain WY517-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=501113 A7A20_RS14375 WP_001130211.1 2962280..2962795(-) (luxS) [Escherichia coli strain WY517-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731