Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A7A20_RS11120 Genome accession   NZ_CP076259
Coordinates   2255201..2256628 (+) Length   475 a.a.
NCBI ID   WP_000980611.1    Uniprot ID   -
Organism   Escherichia coli strain WY517-2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2250201..2261628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A20_RS11080 (A7A20_10990) yeeW 2250386..2250580 (+) 195 WP_000988600.1 DUF5983 family protein -
  A7A20_RS11085 (A7A20_10995) - 2250614..2250706 (+) 93 Protein_2182 DUF957 domain-containing protein -
  A7A20_RS11090 (A7A20_11000) - 2250995..2251132 (-) 138 Protein_2183 transposase domain-containing protein -
  A7A20_RS11095 (A7A20_11005) - 2251195..2251377 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  A7A20_RS11100 (A7A20_11010) tmaR 2251478..2251807 (-) 330 WP_000450409.1 DUF496 family protein -
  A7A20_RS11105 (A7A20_11015) yeeA 2251979..2253037 (-) 1059 WP_001200890.1 FUSC family protein -
  A7A20_RS11110 (A7A20_11020) sbmC 2253234..2253707 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  A7A20_RS11115 (A7A20_11025) dacD 2253826..2254992 (-) 1167 WP_158126821.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  A7A20_RS11120 (A7A20_11030) sbcB 2255201..2256628 (+) 1428 WP_000980611.1 exodeoxyribonuclease I Machinery gene
  A7A20_RS11125 (A7A20_11035) tsuB 2256671..2256898 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  A7A20_RS11130 (A7A20_11040) tsuA 2256912..2257970 (-) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  A7A20_RS11135 (A7A20_11045) plaP 2258149..2259507 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  A7A20_RS11140 (A7A20_11050) yoeI 2259497..2259559 (-) 63 WP_010723108.1 membrane protein YoeI -
  A7A20_RS11145 (A7A20_11055) yeeY 2259774..2260703 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  A7A20_RS11150 (A7A20_11060) yeeZ 2260749..2261573 (-) 825 WP_000754754.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=501104 A7A20_RS11120 WP_000980611.1 2255201..2256628(+) (sbcB) [Escherichia coli strain WY517-2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=501104 A7A20_RS11120 WP_000980611.1 2255201..2256628(+) (sbcB) [Escherichia coli strain WY517-2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585