Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SAAG_RS03230 Genome accession   NC_022113
Coordinates   692980..693951 (+) Length   323 a.a.
NCBI ID   WP_000876309.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus 55/2053     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 687980..698951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAAG_RS03210 (SAAG_01154) nrdI 689046..689444 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  SAAG_RS03215 (SAAG_01155) nrdE 689407..691512 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  SAAG_RS03220 (SAAG_01156) nrdF 691632..692603 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  SAAG_RS03230 (SAAG_01157) ceuB 692980..693951 (+) 972 WP_000876309.1 ABC transporter permease Machinery gene
  SAAG_RS03235 (SAAG_01158) - 693938..694894 (+) 957 WP_001245566.1 iron chelate uptake ABC transporter family permease subunit -
  SAAG_RS03240 (SAAG_01159) - 694891..695652 (+) 762 WP_000616865.1 ABC transporter ATP-binding protein -
  SAAG_RS03245 (SAAG_01160) - 695767..696795 (+) 1029 WP_000754458.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  SAAG_RS03250 (SAAG_01161) - 697112..697426 (-) 315 WP_001127269.1 CHY zinc finger protein -
  SAAG_RS03255 (SAAG_01162) murB 697444..698367 (-) 924 WP_000608444.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35572.07 Da        Isoelectric Point: 10.1963

>NTDB_id=50108 SAAG_RS03230 WP_000876309.1 692980..693951(+) (ceuB) [Staphylococcus aureus subsp. aureus 55/2053]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFIS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=50108 SAAG_RS03230 WP_000876309.1 692980..693951(+) (ceuB) [Staphylococcus aureus subsp. aureus 55/2053]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATTATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTGTCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTATTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGAATCTTAATTGCCCTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATCTCATTACGT
ACAAACGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATCTTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCAAATCATTTCACAATTGTAGGTATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATCAATATTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTTGTG
ACAGTTGGAACTTTACCCTTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
AATTCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCATATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471

Multiple sequence alignment