Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   IUJ46_RS03775 Genome accession   NZ_CP064364
Coordinates   729813..731123 (-) Length   436 a.a.
NCBI ID   WP_010922354.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain PartK-Spyogenes-RM8376     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 724813..736123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ46_RS03750 (IUJ46_03735) - 725417..726469 (-) 1053 WP_002989701.1 BMP family protein -
  IUJ46_RS03755 (IUJ46_03740) - 726563..726952 (-) 390 WP_011285547.1 cytidine deaminase -
  IUJ46_RS03760 (IUJ46_03745) - 727605..728198 (-) 594 WP_010922352.1 class I SAM-dependent methyltransferase -
  IUJ46_RS03765 (IUJ46_03750) coaA 728466..729386 (+) 921 WP_010922353.1 type I pantothenate kinase -
  IUJ46_RS03770 (IUJ46_03755) rpsT 729440..729688 (+) 249 WP_009881183.1 30S ribosomal protein S20 -
  IUJ46_RS03775 (IUJ46_03760) ciaH 729813..731123 (-) 1311 WP_010922354.1 HAMP domain-containing sensor histidine kinase Regulator
  IUJ46_RS03780 (IUJ46_03765) ciaR 731116..731790 (-) 675 WP_010922355.1 response regulator transcription factor Regulator
  IUJ46_RS03785 (IUJ46_03770) - 732136..734673 (-) 2538 WP_010922356.1 M1 family metallopeptidase -
  IUJ46_RS03790 (IUJ46_03775) phoU 734878..735531 (-) 654 WP_002984514.1 phosphate signaling complex protein PhoU -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50013.52 Da        Isoelectric Point: 9.0831

>NTDB_id=501065 IUJ46_RS03775 WP_010922354.1 729813..731123(-) (ciaH) [Streptococcus pyogenes strain PartK-Spyogenes-RM8376]
MNKLKKEILSDNYNHFFHFFAVFTGIFVIMTIIILQIMRFGVYSSVDSSLVSVSNNASSYANRTMARISSFYFDTENNII
KALPDSDSSKLLGTPAANTDIILFSANGTILNAFDAFSNYQNFHLDKRRLGSIETTSLMNFYGQEEKYHTITVGVHIKNY
PAVAYMMAVVNVEQLDRANERYERIIIIVMSVFWLISILASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLARRDDGINPQWTHLDTDFFNAIFENYELVAKEYGKIFYFQN
QVNRSLRMDKALLKQLITILFDNAIKYTDKNGIIEIIVKTTDKNLLISVIDNGPGITDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVMSLKGNITVKDNDPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=501065 IUJ46_RS03775 WP_010922354.1 729813..731123(-) (ciaH) [Streptococcus pyogenes strain PartK-Spyogenes-RM8376]
ATGAATAAATTAAAAAAAGAGATTTTATCAGATAACTATAACCACTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTCATTATGACTATTATTATCTTACAGATTATGCGGTTTGGCGTTTATTCGTCAGTTGACAGTAGTTTAGTTTCTGTTA
GTAATAATGCAAGTAGCTATGCTAATCGTACGATGGCTAGAATATCTTCTTTTTACTTTGATACTGAAAATAACATTATT
AAGGCGCTGCCTGATTCAGATAGTTCTAAGTTATTAGGAACGCCTGCAGCTAATACAGATATCATTTTGTTTAGTGCTAA
TGGAACAATTTTAAATGCTTTTGATGCGTTTTCTAACTATCAAAATTTTCATTTAGATAAACGCCGGTTGGGGAGTATTG
AAACCACCAGTTTAATGAATTTTTATGGACAAGAAGAAAAATACCATACGATAACTGTAGGGGTTCATATCAAAAATTAT
CCTGCAGTTGCCTATATGATGGCAGTAGTAAATGTGGAACAATTAGACCGCGCTAATGAACGTTATGAGCGCATTATTAT
TATAGTTATGAGTGTTTTTTGGCTAATTTCTATTTTAGCAAGTATTTATTTAGCCAAGTGGAGCAGAAAACCTATTTTAG
AAAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAATTAAGGACCCCTTTGGCGGTCTTACAGAATCGT
CTGGAATCGCTTTTTCGTAAGCCCAACGAAACGATATTAGAAAATAGTGAGCATCTCGCTTCTAGTTTAGACGAGGTTCG
CAACATGCGCATCTTAACAACTAATTTATTAAATTTAGCAAGACGAGATGATGGCATTAATCCACAGTGGACTCATTTAG
ATACAGATTTTTTTAATGCTATTTTTGAGAATTATGAACTAGTTGCTAAAGAATATGGAAAAATATTTTATTTTCAGAAC
CAAGTCAATAGATCGTTAAGAATGGATAAGGCTTTACTAAAACAATTAATAACGATTTTATTTGACAATGCTATTAAATA
TACAGATAAAAATGGTATTATTGAAATTATAGTGAAAACAACGGACAAAAATTTATTAATTTCTGTTATTGATAATGGTC
CAGGGATAACAGATGAAGAAAAGAAAAAGATTTTTGATCGTTTTTATCGAGTTGACAAAGCTAGAACACGGCAAACAGGT
GGATTTGGCTTGGGGTTGGCTTTAGCTCAGCAAATCGTGATGTCTTTAAAAGGAAATATTACAGTAAAGGATAATGATCC
TAAAGGTAGTATTTTTGAAGTCAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.895

100

0.58

  ciaH Streptococcus pneumoniae Rx1

51.37

100

0.516

  ciaH Streptococcus pneumoniae D39

51.37

100

0.516

  ciaH Streptococcus pneumoniae R6

51.37

100

0.516

  ciaH Streptococcus pneumoniae TIGR4

51.37

100

0.516