Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IS178_RS17500 Genome accession   NZ_CP064354
Coordinates   3866745..3867380 (-) Length   211 a.a.
NCBI ID   WP_029611293.1    Uniprot ID   -
Organism   Pseudomonas fragi strain NL20W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3861745..3872380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS178_RS17470 (IS178_17470) - 3862699..3863310 (-) 612 WP_016779942.1 hypothetical protein -
  IS178_RS17475 (IS178_17475) murB 3863326..3864345 (-) 1020 WP_083369823.1 UDP-N-acetylmuramate dehydrogenase -
  IS178_RS17480 (IS178_17480) kdsB 3864342..3865106 (-) 765 WP_016779940.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IS178_RS17485 (IS178_17485) - 3865103..3865288 (-) 186 WP_016779939.1 Trm112 family protein -
  IS178_RS17490 (IS178_17490) lpxK 3865310..3866320 (-) 1011 WP_016779938.1 tetraacyldisaccharide 4'-kinase -
  IS178_RS17495 (IS178_17495) - 3866320..3866748 (-) 429 WP_016779937.1 biopolymer transporter ExbD -
  IS178_RS17500 (IS178_17500) exbB 3866745..3867380 (-) 636 WP_029611293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IS178_RS17505 (IS178_17505) - 3867429..3869645 (-) 2217 Protein_3451 DNA internalization-related competence protein ComEC/Rec2 -
  IS178_RS17510 (IS178_17510) - 3869780..3870295 (+) 516 WP_016779933.1 DUF2062 domain-containing protein -
  IS178_RS17515 (IS178_17515) - 3870341..3871120 (-) 780 WP_016779932.1 ABC transporter permease -
  IS178_RS17520 (IS178_17520) - 3871117..3872049 (-) 933 WP_016779931.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23020.24 Da        Isoelectric Point: 6.8765

>NTDB_id=500990 IS178_RS17500 WP_029611293.1 3866745..3867380(-) (exbB) [Pseudomonas fragi strain NL20W]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNTLGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAILAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDDLVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=500990 IS178_RS17500 WP_029611293.1 3866745..3867380(-) (exbB) [Pseudomonas fragi strain NL20W]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATTTGCTCGGCCAGGTCTGGGTCTGGATCAAAGACA
AACAGATGGACAAGGAAAAACTCAAGCAGCTGCGCGCCGATTCACCCCTGGGGGAGATTCTCGCTGCCGGCCTGGCCAAC
TCCCGGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAGGCCGCCGCGCGGGTCATTCACGAGCTGGAGCGCTACCT
CAATACCCTGGGCACCATCGCGGCAATGGCGCCGTTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAATGCTGCCATCCTGGCGGGCGGTATTTCCAAGGCGCTGATCACCACGGCT
GCAGGCCTGATGGTGGGTATCCCGGCGGTATTCTTCCATCGTTTCTTGCAGCGTCGCGTTGACGACCTGGTGGTCGGCAT
GGAACAGGAAGCAATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGAAGTCGACATGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844