Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ISX85_RS06395 Genome accession   NZ_CP064353
Coordinates   1546877..1548250 (+) Length   457 a.a.
NCBI ID   WP_007659148.1    Uniprot ID   S0GTE5
Organism   Parabacteroides goldsteinii strain MTS01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1541877..1553250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX85_RS06375 - 1542217..1542498 (-) 282 Protein_1250 HU family DNA-binding protein -
  ISX85_RS06380 - 1543152..1545272 (+) 2121 WP_007659141.1 KamA family radical SAM protein -
  ISX85_RS06385 - 1545308..1545850 (+) 543 WP_007659143.1 ferredoxin domain-containing protein -
  ISX85_RS06390 - 1545886..1546842 (+) 957 WP_007659146.1 hypothetical protein -
  ISX85_RS06395 radA 1546877..1548250 (+) 1374 WP_007659148.1 DNA repair protein RadA Machinery gene
  ISX85_RS06400 - 1548263..1550047 (+) 1785 WP_010803447.1 hypothetical protein -
  ISX85_RS06405 - 1550044..1550742 (+) 699 WP_010803446.1 hypothetical protein -
  ISX85_RS06410 - 1550749..1552329 (+) 1581 WP_007659155.1 NAD(P)/FAD-dependent oxidoreductase -
  ISX85_RS06415 - 1552384..1552827 (+) 444 WP_007659162.1 VOC family protein -
  ISX85_RS06420 - 1552834..1553226 (-) 393 WP_007659163.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50072.81 Da        Isoelectric Point: 6.6054

>NTDB_id=500970 ISX85_RS06395 WP_007659148.1 1546877..1548250(+) (radA) [Parabacteroides goldsteinii strain MTS01]
MAKTKTVYVCSNCGADSPKWVGKCPNCGEWNTYVEEIVATKEPSAKRIIPGITETGKVRPVLLRDITSEEESRIDLKDGE
LNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGLNNLKTLYVSGEESSRQLKLRADRIAHENPECFILSETNLEQIFV
QARNVQPDLLIIDSIQTIYTELVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKVLEHIVDTVLQFE
GDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLREVSNPSELLLTQNHEGLSGVAIAAAIEGIRPFLIETQALVSSAVYG
TPQRSATGFDLRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGLKVNDPAIDLAVISAILSSSLDISIEQGVCMCGEVGLSG
EIRPVNRIEQRILEAEKLGFSRIIIPHNNLKGFDTNKCKIQIVQVRKVEEAFRHLFG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=500970 ISX85_RS06395 WP_007659148.1 1546877..1548250(+) (radA) [Parabacteroides goldsteinii strain MTS01]
ATGGCTAAGACAAAAACAGTATATGTCTGCTCCAATTGCGGAGCAGACTCTCCTAAGTGGGTCGGTAAATGTCCGAATTG
CGGCGAATGGAACACCTATGTGGAAGAAATCGTTGCAACCAAAGAACCTTCTGCAAAACGTATTATTCCCGGTATAACAG
AAACGGGTAAAGTACGTCCCGTCCTGTTACGTGATATTACCTCCGAAGAAGAATCCCGGATTGATTTGAAAGATGGAGAA
CTGAACCGTGTCCTGGGAGGCGGTTTGGTGAAAGGCTCGTTGGTGCTGATTGGCGGTGAACCGGGTATCGGTAAGTCGAC
TTTAGTCCTGCAAACAGTTCTGGGATTGAACAATCTCAAGACATTATATGTATCGGGTGAGGAAAGCAGTCGCCAGCTGA
AACTGCGTGCCGACCGTATCGCCCACGAAAATCCGGAATGCTTCATTCTGAGTGAAACGAATCTGGAACAGATATTTGTC
CAGGCCCGTAACGTACAGCCTGATTTACTGATTATAGACTCTATCCAGACAATCTATACAGAACTCGTTGAATCTTCTCC
CGGCAGCGTCTCACAGGTTCGTGAGTGTAGTGCAGCAATCCTTAAATATGCCAAAGAGAGCGGTGTCCCTGTTCTGCTGA
TAGGCCATATTAATAAAGAAGGAAGTATTGCCGGGCCGAAAGTACTGGAACATATTGTCGATACCGTTCTTCAGTTTGAA
GGCGATCAACATTATATGTACCGTATTCTCCGGAGTATCAAAAACCGTTTCGGCAGCACGGCTGAATTGGGTATTTATGA
GATGCGTCAGGATGGCTTGCGTGAAGTCAGCAACCCGTCCGAGTTGTTGCTGACACAGAACCATGAAGGATTGAGCGGTG
TGGCAATTGCTGCCGCCATCGAAGGCATACGTCCTTTCCTGATAGAAACACAGGCGCTGGTAAGTTCGGCTGTCTATGGA
ACTCCGCAACGCAGTGCGACGGGTTTTGATCTGAGAAGAATGAATATGCTGCTGGCTGTGTTGGAGAAACGCGCCGGATT
CAAGCTGATACAGAAAGACGTGTTCCTGAACATTGCCGGGGGACTGAAGGTCAACGACCCGGCTATCGACCTGGCTGTTA
TCAGCGCTATCCTTTCGTCGAGTCTCGATATCAGTATCGAACAAGGCGTTTGTATGTGTGGCGAGGTCGGCTTGTCGGGC
GAAATCCGTCCGGTCAACCGCATCGAACAACGGATTCTGGAAGCAGAGAAGCTGGGCTTTTCACGCATCATCATCCCTCA
CAATAACCTGAAAGGGTTTGATACGAATAAATGTAAGATACAAATCGTACAGGTCAGAAAGGTGGAAGAAGCTTTCCGGC
ATTTGTTCGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S0GTE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.07

100

0.523
  radA Streptococcus pneumoniae Rx1

48.908

100

0.49
  radA Streptococcus pneumoniae D39

48.908

100

0.49
  radA Streptococcus pneumoniae R6

48.908

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.908

100

0.49
  radA Streptococcus mitis NCTC 12261

48.908

100

0.49
  radA Streptococcus mitis SK321

48.908

100

0.49