Detailed information NTG0500933

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: IT766_RS11705
• Genome accession: NZ_CP064350
• Coordinates: 2574000..2575007 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae C6706
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2569000..2580007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IT766_RS11680 (IT766_11680)	rraA	2569575..2570090 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
IT766_RS11685 (IT766_11685)	-	2570165..2571082 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
IT766_RS11690 (IT766_11690)	hslU	2571186..2572517 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
IT766_RS11695 (IT766_11695)	hslV	2572583..2573140 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
IT766_RS11700 (IT766_11700)	-	2573277..2573828 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
IT766_RS11705 (IT766_11705)	cytR	2574000..2575007 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
IT766_RS11710 (IT766_11710)	priA	2575313..2577517 (-)	2205	WP_001247858.1	primosomal protein N'	-
IT766_RS11715 (IT766_11715)	rpmE	2577772..2577990 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
IT766_RS11720 (IT766_11720)	-	2578298..2579575 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
IT766_RS11725 (IT766_11725)	metJ	2579686..2580003 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=500933 IT766_RS11705 WP_000224452.1 2574000..2575007(-) (cytR) [Vibrio cholerae C6706]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=500933 IT766_RS11705 WP_000224452.1 2574000..2575007(-) (cytR) [Vibrio cholerae C6706]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904