Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   UMNK88_RS05455 Genome accession   NC_017641
Coordinates   1121164..1121793 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli UMNK88     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116164..1126793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMNK88_RS05430 (UMNK88_1109) ycbZ 1116553..1118313 (-) 1761 WP_000156512.1 Lon protease family protein -
  UMNK88_RS05435 (UMNK88_1110) matP 1118499..1118951 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  UMNK88_RS05440 (UMNK88_1111) ompA 1119027..1120079 (-) 1053 WP_001361736.1 porin OmpA -
  UMNK88_RS05450 (UMNK88_1112) sulA 1120436..1120945 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  UMNK88_RS05455 (UMNK88_1114) sxy/tfoX 1121164..1121793 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  UMNK88_RS05460 (UMNK88_1113) yccS 1121756..1123918 (-) 2163 WP_000875061.1 YccS family putative transporter -
  UMNK88_RS05465 (UMNK88_1115) yccF 1123928..1124374 (-) 447 WP_001261235.1 YccF domain-containing protein -
  UMNK88_RS05470 (UMNK88_1116) helD 1124497..1126551 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=50084 UMNK88_RS05455 WP_000839153.1 1121164..1121793(+) (sxy/tfoX) [Escherichia coli UMNK88]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=50084 UMNK88_RS05455 WP_000839153.1 1121164..1121793(+) (sxy/tfoX) [Escherichia coli UMNK88]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment