Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LacP0734_RS12680 Genome accession   NZ_CP064304
Coordinates   2607450..2608814 (+) Length   454 a.a.
NCBI ID   WP_194958417.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. tolerans strain MGB0734     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2602450..2613814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LacP0734_RS12655 (LacP0734_12655) - 2602653..2603999 (-) 1347 WP_194958416.1 aminopeptidase C -
  LacP0734_RS12660 (LacP0734_12660) - 2604322..2605641 (-) 1320 WP_003605926.1 C1 family peptidase -
  LacP0734_RS12665 (LacP0734_12665) - 2605886..2606263 (+) 378 WP_003567260.1 DUF805 domain-containing protein -
  LacP0734_RS12670 (LacP0734_12670) - 2606380..2606670 (-) 291 WP_003567258.1 GNAT family N-acetyltransferase -
  LacP0734_RS12675 (LacP0734_12675) - 2606891..2607433 (+) 543 WP_003567256.1 dUTP diphosphatase -
  LacP0734_RS12680 (LacP0734_12680) radA 2607450..2608814 (+) 1365 WP_194958417.1 DNA repair protein RadA Machinery gene
  LacP0734_RS12685 (LacP0734_12685) - 2608836..2609951 (+) 1116 WP_003567252.1 PIN/TRAM domain-containing protein -
  LacP0734_RS12690 (LacP0734_12690) - 2610254..2611141 (+) 888 WP_194958418.1 ABC transporter ATP-binding protein -
  LacP0734_RS12695 (LacP0734_12695) - 2611159..2611935 (+) 777 WP_194958419.1 ABC transporter permease -
  LacP0734_RS12700 (LacP0734_12700) - 2612253..2613524 (+) 1272 WP_194958420.1 MucBP domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49128.44 Da        Isoelectric Point: 6.9028

>NTDB_id=500632 LacP0734_RS12680 WP_194958417.1 2607450..2608814(+) (radA) [Lacticaseibacillus paracasei subsp. tolerans strain MGB0734]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKVKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLADTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAEIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=500632 LacP0734_RS12680 WP_194958417.1 2607450..2608814(+) (radA) [Lacticaseibacillus paracasei subsp. tolerans strain MGB0734]
ATGGCGAAAGCAAAAACACAATATGTTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGCCGGTGTCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACCGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACAGCAGCCGGCAGTAAGG
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGCTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTGATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTACTACTGCA
GGTGTCAGGTCAATTGGCCGATACCGGCGGAACCGTTTTGTATGTCTCTGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGCGTGGCAAATTCGGGGATGTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTTGGTTC
TGTGGCAGAGATTCGTGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGCGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGGGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTTAAAAATCGATTTGGATCGACCAATGAAATCGGCATTTTCGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGGCCAATCTTAGTCGAGATTCAAGCCTTGATCAGTCCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGAGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAACTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAATTGGGTTTCAAACGGATTTTTGTACCACGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

67.991

99.78

0.678
  radA Streptococcus pneumoniae Rx1

67.991

99.78

0.678
  radA Streptococcus pneumoniae D39

67.991

99.78

0.678
  radA Streptococcus pneumoniae R6

67.991

99.78

0.678
  radA Streptococcus pneumoniae TIGR4

67.991

99.78

0.678
  radA Streptococcus mitis SK321

67.77

99.78

0.676
  radA Bacillus subtilis subsp. subtilis str. 168

64.537

100

0.645