Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LacP0734_RS08615 Genome accession   NZ_CP064304
Coordinates   1762111..1763910 (+) Length   599 a.a.
NCBI ID   WP_003577415.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. tolerans strain MGB0734     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1757111..1768910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LacP0734_RS08600 (LacP0734_08600) - 1757930..1758616 (+) 687 WP_003563024.1 hydrolase -
  LacP0734_RS08605 (LacP0734_08605) brnQ 1759358..1760737 (+) 1380 WP_194958197.1 branched-chain amino acid transport system II carrier protein -
  LacP0734_RS08610 (LacP0734_08610) - 1760888..1761982 (-) 1095 WP_003592824.1 LCP family protein -
  LacP0734_RS08615 (LacP0734_08615) pepF 1762111..1763910 (+) 1800 WP_003577415.1 oligoendopeptidase F Regulator
  LacP0734_RS08620 (LacP0734_08620) - 1763907..1764788 (+) 882 WP_016363473.1 NAD(P)-dependent oxidoreductase -
  LacP0734_RS08625 (LacP0734_08625) - 1764785..1765633 (+) 849 WP_016380985.1 metallophosphoesterase family protein -
  LacP0734_RS08630 (LacP0734_08630) - 1765705..1766502 (-) 798 WP_012490865.1 metal ABC transporter permease -
  LacP0734_RS08635 (LacP0734_08635) - 1766499..1767218 (-) 720 WP_003577411.1 metal ABC transporter ATP-binding protein -
  LacP0734_RS08640 (LacP0734_08640) - 1767292..1767636 (-) 345 WP_003563007.1 hypothetical protein -
  LacP0734_RS08645 (LacP0734_08645) - 1767664..1768716 (-) 1053 WP_194958932.1 capsular biosynthesis protein CpsH -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67252.36 Da        Isoelectric Point: 5.6373

>NTDB_id=500622 LacP0734_RS08615 WP_003577415.1 1762111..1763910(+) (pepF) [Lacticaseibacillus paracasei subsp. tolerans strain MGB0734]
MQHLPARAEVPTELTWDLTTIYPDDKAWQVDFEAVRQQAKEAAALKGTLGKSPEALVAGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNAAYQAMNAKAESLAADLASQLAFMDPEILAIPADQLTAWRDTESLKPYGHFIDAITVNRQHVLTTAAESLIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKDAFEALLRAYESLKNTFAQTLSGQIKA
HNFNALAHHYPDARAAAMASNHIPESVYTTLLDQVNAHLPLLHRYIALRKKILNVDQLHMYDIYTPLTGRPPLSFTLDQA
KDEALKALAPLGNDYLDHMREIFNNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HHQPYVYGDYPIFVAEIASTTNENLLTDYFLKNTNDPKVRAYILNYYLDGFKGTVFRQAQFADFEHWIHQQDQHGEPLTA
TSMSSYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISGGEPEAVSRYIGYLKSGSSKY
AIDTMKAAGVDMTKPDYLEAAFSLFEQRLAELEEILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=500622 LacP0734_RS08615 WP_003577415.1 1762111..1763910(+) (pepF) [Lacticaseibacillus paracasei subsp. tolerans strain MGB0734]
ATGCAACATTTACCGGCACGCGCAGAAGTCCCTACTGAATTGACATGGGATCTCACGACCATTTATCCAGATGACAAGGC
TTGGCAAGTTGACTTTGAAGCCGTTCGTCAGCAAGCAAAGGAAGCGGCAGCACTTAAGGGTACATTGGGCAAGTCGCCTG
AAGCACTTGTCGCAGGTATCAAAGCCGTTCTCGCGGTGTTCAGACGCTTTGAAAAGGTTTATGTCTATTCCAGCTTGAAA
AGTGATCAAGACACTGGCAATGCAGCGTATCAAGCCATGAATGCCAAAGCAGAAAGTCTGGCAGCTGATCTTGCCAGCCA
ATTAGCCTTCATGGATCCGGAAATTCTGGCGATTCCAGCCGATCAGTTGACCGCTTGGCGCGATACCGAAAGCCTCAAAC
CCTATGGTCACTTTATTGATGCCATCACTGTGAATCGCCAACACGTCCTGACCACAGCGGCTGAGTCATTAATTGCCAGT
GCTGGAGATGCGCTGAATGCCAGTCATGCAACCTTCAATGTGTTGAACAACTCCGACCTGCAATTTGGCTTTGTTGAAAA
TGAAGACGGTGAGACCGTGCAACTCAGCAATGGTTTGTATGGCCAACTCATTCGGTCAACAAATCGCAAGCTGCGGAAAG
ACGCGTTTGAGGCTTTGCTGCGGGCATATGAAAGTCTTAAGAATACCTTTGCTCAAACATTGAGTGGCCAGATCAAAGCT
CATAACTTCAATGCTTTAGCGCATCATTATCCCGATGCTCGCGCTGCTGCAATGGCAAGTAACCACATCCCCGAAAGTGT
CTACACAACACTGCTTGATCAAGTCAACGCTCACTTGCCATTACTACATCGCTATATTGCCTTACGTAAAAAGATTCTGA
ATGTCGATCAACTGCATATGTATGATATCTACACACCGCTGACCGGACGTCCGCCATTGAGTTTCACCCTCGATCAGGCA
AAAGACGAAGCCTTAAAGGCATTGGCTCCGCTGGGAAATGATTATTTAGATCATATGCGGGAAATCTTTAATAATCGTTA
CATTGATGTCGTCGAAAATAAGGGCAAACGGTCCGGCGCTTATTCCGGTGGCGCGTATGACACCAATCCGTTCATTTTAC
TGAACTGGCACGATGCCGTTGATGAATTGTACACTTTGGTTCACGAAACTGGTCACAGTGTGCACAGCTGGTACACTCGT
CATCACCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTCGCAGAAATTGCCTCAACAACCAATGAAAATTTATTGAC
GGACTACTTCCTAAAAAACACCAATGATCCTAAAGTTCGGGCGTACATTTTGAATTACTATCTAGACGGCTTCAAAGGAA
CGGTCTTCCGTCAGGCTCAATTTGCTGACTTTGAACATTGGATTCATCAACAAGACCAGCATGGTGAACCATTGACGGCA
ACCAGCATGTCCTCCTATTATGCGGATCTCAATGCCCGTTATTACGGACCAGATGTTGCACGTGATCCTGAAATTGCCTT
TGAATGGGCTCGTATTCCACATTTCTATTACAATTATTATGTTTACCAGTACGCAACTGGTTTTGCCGCTGCCTCGACTC
TGGCCGCCGGCATCAGCGGTGGCGAACCAGAGGCGGTTTCCCGCTATATCGGCTACTTGAAATCTGGCAGTTCCAAGTAT
GCGATTGATACAATGAAAGCGGCCGGCGTTGATATGACCAAGCCAGATTATTTAGAAGCCGCCTTCTCACTATTTGAACA
ACGACTCGCTGAATTAGAAGAAATTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99.165

0.513