Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IQ966_RS02435 Genome accession   NZ_CP064275
Coordinates   411619..412035 (+) Length   138 a.a.
NCBI ID   WP_181170505.1    Uniprot ID   -
Organism   Priestia megaterium strain B1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 406619..417035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ966_RS02415 - 407000..407671 (-) 672 WP_208732973.1 response regulator transcription factor -
  IQ966_RS02420 - 407997..408815 (+) 819 WP_014458697.1 phytoene/squalene synthase family protein -
  IQ966_RS02425 - 408851..410800 (-) 1950 WP_208732972.1 FUSC family protein -
  IQ966_RS02430 - 410957..411217 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  IQ966_RS02435 nucA/comI 411619..412035 (+) 417 WP_181170505.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IQ966_RS02440 comJ 412071..412478 (+) 408 WP_116739299.1 competence protein ComJ -
  IQ966_RS02445 - 412710..413300 (-) 591 WP_140451079.1 CPBP family intramembrane glutamic endopeptidase -
  IQ966_RS02450 helD 413689..416007 (-) 2319 WP_208732970.1 RNA polymerase recycling motor HelD -
  IQ966_RS27775 - 416251..416376 (-) 126 WP_014458690.1 hypothetical protein -
  IQ966_RS02455 - 416517..417032 (-) 516 WP_115654720.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15095.72 Da        Isoelectric Point: 4.2601

>NTDB_id=500488 IQ966_RS02435 WP_181170505.1 411619..412035(+) (nucA/comI) [Priestia megaterium strain B1]
MASLFIIIACVLGFIGHAAFLAPEKTEAEANYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGY
PTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 417 bp        

>NTDB_id=500488 IQ966_RS02435 WP_181170505.1 411619..412035(+) (nucA/comI) [Priestia megaterium strain B1]
ATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCGGCGTTTTTAGCTCCTGAAAAAACGGA
AGCCGAAGCAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAACCGGCGATCATATTCGCGACGCAA
TTGCTGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGATGGTGCTGAAGCAAACCGAGAAGAATCGCTAAAAGGATAC
CCAACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGGCGGAGCAGGAGCTGATATTCGCTA
TATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAACAGTACCCAGATGGTACACGCGTAC
AATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

91.304

0.594